Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_L20
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 117 2e-27
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 117 2e-27
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 81 2e-16
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 78 1e-15
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 35 0.012
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 27 3.2
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 4.2
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 5.6
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 9.8
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 117 bits (282), Expect = 2e-27
Identities = 55/124 (44%), Positives = 75/124 (60%)
Frame = -2
Query: 548 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 369
L SP++ V+ V E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESF
Sbjct: 719 LASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESF 778
Query: 368 GFTADLRSNTGGQAFPQCVFDHWQVLXWRPVRTSEQALQRCTGNEKEERIEGRSPRLNSI 189
GFT +LR T GQAFPQ VFDHW + P+ + + Q K + ++ P
Sbjct: 779 GFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVPDYTEY 838
Query: 188 FGQI 177
+ ++
Sbjct: 839 YDRL 842
Score = 54.4 bits (125), Expect = 2e-08
Identities = 25/43 (58%), Positives = 30/43 (69%)
Frame = -1
Query: 609 HRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCX*SSCG 481
HRGGGQIIPT RR +YA L A P + EPV+L EIQ ++ G
Sbjct: 699 HRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMG 741
Score = 52.8 bits (121), Expect = 6e-08
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = -3
Query: 721 TLCAGFQWAXKEGVMAEENLRGVRFNIYDVTLHTDAI 611
++ A F WA KEG M EENLR RFNI DV LH DAI
Sbjct: 662 SVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAI 698
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 117 bits (282), Expect = 2e-27
Identities = 55/124 (44%), Positives = 75/124 (60%)
Frame = -2
Query: 548 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 369
L SP++ V+ V E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESF
Sbjct: 719 LASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESF 778
Query: 368 GFTADLRSNTGGQAFPQCVFDHWQVLXWRPVRTSEQALQRCTGNEKEERIEGRSPRLNSI 189
GFT +LR T GQAFPQ VFDHW + P+ + + Q K + ++ P
Sbjct: 779 GFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVPDYTEY 838
Query: 188 FGQI 177
+ ++
Sbjct: 839 YDRL 842
Score = 54.4 bits (125), Expect = 2e-08
Identities = 25/43 (58%), Positives = 30/43 (69%)
Frame = -1
Query: 609 HRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCX*SSCG 481
HRGGGQIIPT RR +YA L A P + EPV+L EIQ ++ G
Sbjct: 699 HRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMG 741
Score = 52.8 bits (121), Expect = 6e-08
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = -3
Query: 721 TLCAGFQWAXKEGVMAEENLRGVRFNIYDVTLHTDAI 611
++ A F WA KEG M EENLR RFNI DV LH DAI
Sbjct: 662 SVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAI 698
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 80.6 bits (190), Expect = 2e-16
Identities = 40/92 (43%), Positives = 56/92 (60%)
Frame = -2
Query: 542 SPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGF 363
SP L V+ P ++ IY +L RRRGHV ++ G+P+++V+A +PV +S GF
Sbjct: 837 SPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGF 896
Query: 362 TADLRSNTGGQAFPQCVFDHWQVLXWRPVRTS 267
DLR +T GQA Q VFDHWQV+ P+ S
Sbjct: 897 ETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKS 928
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = -1
Query: 609 HRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEI 505
+RGGGQIIPT RR Y+ LTA PRLMEPVY+ E+
Sbjct: 815 YRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEV 849
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 709 GFQWAXKEGVMAEENLRGVRFNIYDVTLHTDAI 611
GFQW +EG + +E +R V F + DV L + I
Sbjct: 782 GFQWGTREGPLCDETIRNVNFRLMDVVLAPEQI 814
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 78.2 bits (184), Expect = 1e-15
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Frame = -2
Query: 485 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 306
+G +YGV+++RRG V +E GTP FIVKA +PV ESFGF ++ T G A+PQ +F
Sbjct: 878 LGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFH 937
Query: 305 HWQVLXWRP--VRTSEQALQ 252
+++L P V T+E+ L+
Sbjct: 938 GFEMLDENPFWVPTTEEELE 957
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 597 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQ 502
GQ+I + + L PRLM +Y C++Q
Sbjct: 841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQ 872
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 35.1 bits (77), Expect = 0.012
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = -2
Query: 614 HPIEVVAKSFQQLEDACTHVC*L-LSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVF 438
HP++ +F+ + L +P++ + V + P GG+ G L++R+ +
Sbjct: 646 HPVDSSELAFRLATISAFRTAFLQANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIV 705
Query: 437 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 330
+ F ++A +P+N F +++D+R+ T G+
Sbjct: 706 DSD--TDEDEFTLQAEVPLNSMFSYSSDIRALTKGK 739
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = -2
Query: 548 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 369
+L ++W++Y FV + +P AV +Y R FE +I A + V+
Sbjct: 338 ILLKLIWNIYTFVYYGLPFFAVYRLYKQAGESRKLGFEAKYSLLRTCYIALAAVTVSNCL 397
Query: 368 GFTADLRSNTGGQ 330
F +R G Q
Sbjct: 398 -FLGVVRPLLGSQ 409
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/47 (27%), Positives = 18/47 (38%)
Frame = +1
Query: 238 FPVQRCRACSEVRTGLQXRTCQWSNTHCGKACPPVLERKSAVKPNDS 378
+ + RC C E C + C K C P + K K +DS
Sbjct: 414 YQIMRCALCGEFLKNAAGMQCIDCHYTCHKKCYPKVVTKCISKSSDS 460
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 364 LLPICVPTPADRPSRSAYSTIGRSSXGDPC 275
+LP+ + TPA P + YS G S C
Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTSIFNPVC 138
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -2
Query: 548 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHV 441
+ +PV + VP +A+ +G++N+R G +
Sbjct: 828 VFNPVTQGALLMYTILVPFIALSAAFGIMNKRLGGI 863
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,379,544
Number of Sequences: 5004
Number of extensions: 73013
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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