Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L18
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    28   2.0  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   4.6  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.0  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    26   8.0  

>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 589 KRSSPFKLPRDPVSRTLP 536
           K S+PFK+P DP+ + +P
Sbjct: 104 KNSAPFKVPVDPIKQNIP 121


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 514 RPSQTPRLAVSSKPDHAGV*TATSVSATSPLCTLGTKHRAPADIIXRAPVXPNRVS-NET 690
           +PS +PR++V S  + + V   T  S T PL  +   + + +  I +    P++V  N +
Sbjct: 219 KPSASPRISVRSLGNSSVVRPPTRTSTTRPLSRVNVTNASGS--ISKNSTSPSKVKVNAS 276

Query: 691 XKVV 702
            K+V
Sbjct: 277 TKIV 280


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 101 RSFGHLVHALGRAAGGAKLPSAGLCLNTKK 12
           +S G +VHA  RAA    +  A  CL  KK
Sbjct: 65  KSRGRVVHACSRAALPRAIADASHCLEEKK 94


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 512 YICQRITQVP*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 378
           Y+C  +  +  G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,263
Number of Sequences: 5004
Number of extensions: 65534
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)