Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_L17
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 155 6e-39
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 108 8e-25
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 99 4e-22
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 99 9e-22
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 84 2e-17
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 71 2e-13
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 67 3e-12
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 52 1e-07
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 30 0.48
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 29 1.1
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 27 3.4
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 5.9
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 5.9
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 7.8
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 26 7.8
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 155 bits (377), Expect = 6e-39
Identities = 77/141 (54%), Positives = 97/141 (68%)
Frame = -2
Query: 653 LEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSXQLAGKEQLXXXXXXXX 474
+ E ERSLHDAIMIV+ +KN+ VVAGGGA +M++S +LR +S ++GK+Q
Sbjct: 387 IAEVERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARS 446
Query: 473 XXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLN 294
IPRQL DNAG D T +LNKLR +HA GE GVD+ S V +NF K VWEP+ VK N
Sbjct: 447 LEVIPRQLCDNAGFDSTNILNKLRMQHAKGEMWAGVDMDSEGVANNFEKFVWEPSTVKSN 506
Query: 293 AVSAACEATAQILSVDETIRN 231
A+ +A EA ILSVDETI+N
Sbjct: 507 AILSATEAATLILSVDETIKN 527
Score = 30.3 bits (65), Expect = 0.36
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -3
Query: 697 AXTCTLILRGGAXQF 653
A TCTLILRGGA QF
Sbjct: 372 AKTCTLILRGGADQF 386
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 108 bits (260), Expect = 8e-25
Identities = 52/137 (37%), Positives = 83/137 (60%)
Frame = -2
Query: 653 LEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSXQLAGKEQLXXXXXXXX 474
LEE ERSLHDA+ ++R +K A++AGGG+ +++ + L H+ QL G+E +
Sbjct: 386 LEEAERSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEA 445
Query: 473 XXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLN 294
IP LA+NAGL+ ++ +LR +HA GE T G++V G V + + V +P LV ++
Sbjct: 446 LEIIPVTLAENAGLNAIQVVTELRSRHANGEKTAGINVRKGIVTNILEENVLQPLLVNIS 505
Query: 293 AVSAACEATAQILSVDE 243
A+ A E T I+ +D+
Sbjct: 506 AIQLAAETTKMIMKIDD 522
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 99 bits (238), Expect = 4e-22
Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 12/152 (7%)
Frame = -2
Query: 653 LEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSXQLAGKEQLXXXXXXXX 474
L+E ERS+HD++ +V+RT+++ VV GGGAV+ +S +L + + L +EQL
Sbjct: 390 LDEMERSMHDSLSVVKRTLESGKVVPGGGAVETALSIYLENFATSLGSREQLAIAEFAQA 449
Query: 473 XXAIPRQLADNAGLDGTGLLNKLRQKHAA------------GEHTHGVDVISGEVVDNFA 330
IPR LA NA D T L KLR HAA G +G+D+++G + DN
Sbjct: 450 LLIIPRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKNYGLDLLNGVIRDNVK 509
Query: 329 KCVWEPALVKLNAVSAACEATAQILSVDETIR 234
V EP++ KL ++ +A EA IL +D +I+
Sbjct: 510 AGVLEPSMSKLKSLKSAVEACIAILRIDTSIK 541
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 98.7 bits (235), Expect = 9e-22
Identities = 50/148 (33%), Positives = 74/148 (50%)
Frame = -2
Query: 656 VLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSXQLAGKEQLXXXXXXX 477
++ E ER+L DA+ + R + + GGGA +M +S L + + G Q
Sbjct: 381 IINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVAQWPYRAVAD 440
Query: 476 XXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKL 297
IPR L N G + L +LR KHA G+H+ G+D +G VVD VWEP VKL
Sbjct: 441 AIEIIPRTLVQNCGANPIKALTELRAKHAEGQHSFGIDGETGRVVDMHEYGVWEPEAVKL 500
Query: 296 NAVSAACEATAQILSVDETIRNVKGGEE 213
++ A E+ +L VD+ + V+ E
Sbjct: 501 QSIKTAIESACLLLRVDDIVSGVRKHSE 528
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 84.2 bits (199), Expect = 2e-17
Identities = 43/141 (30%), Positives = 74/141 (52%)
Frame = -2
Query: 656 VLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSXQLAGKEQLXXXXXXX 477
+L+E+ER++HDA+ ++ +T+ V GGG +M ++ + + GK+ +
Sbjct: 378 LLDESERAIHDALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAVSAFAK 437
Query: 476 XXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKL 297
+P LADNAG D + L+ +L+ H G T G+D+ GE+ D AK + E +K
Sbjct: 438 ALSQLPTILADNAGFDSSELVAQLKAAHYDGNDTMGLDMDEGEIADMRAKGILEALKLKQ 497
Query: 296 NAVSAACEATAQILSVDETIR 234
VS+ E +L VD ++
Sbjct: 498 AVVSSGSEGAQLLLRVDTILK 518
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 70.9 bits (166), Expect = 2e-13
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Frame = -2
Query: 659 TVLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSXQLAGKEQLXXXXXX 480
T L++ ER++ D + IV+ +K++ ++ G GA DMQ+ L S + G Q
Sbjct: 383 TYLDDLERAIDDGVNIVKALVKDNRLIFGAGASDMQLCIRLISVGEKTPGIYQHAIKQYG 442
Query: 479 XXXXAIPRQLADNAGLDGTGLLNKL-RQKHAAGEHTHGVDV--ISGEVVDNFAKCVWEPA 309
+PR +++NAGLD T +++KL H + GVDV + +D +++
Sbjct: 443 EAFEVVPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAKEAGIFDVL 502
Query: 308 LVKLNAVSAACEATAQILSVDETIRNVKGG 219
L K +A+ A E +L+VD+ + + G
Sbjct: 503 LAKKSAIRLATETVLTVLNVDQVVMSKPAG 532
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 66.9 bits (156), Expect = 3e-12
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Frame = -2
Query: 656 VLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSXQLAGKEQLXXXXXXX 477
+++E +R+LHDA+ +VR I+++ VV GGGA ++ S + + ++ G +Q
Sbjct: 396 IVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFAD 455
Query: 476 XXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTH-GVDVISGEVVDNFAKCVWEPALVK 300
IP LA+N+GL L ++ +H + G+D + D + V +P + K
Sbjct: 456 ALDTIPLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGK 515
Query: 299 LNAVSAACEATAQILSVDETI 237
+ A + +L V++ I
Sbjct: 516 KQQLLLATQLCRMVLKVNDII 536
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 51.6 bits (118), Expect = 1e-07
Identities = 29/142 (20%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Frame = -2
Query: 653 LEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSH--SXQLAGKEQLXXXXXX 480
+++ + + D + V+ ++++ ++ G GA ++ +AHLR+ + ++ GK ++
Sbjct: 383 IQQIQDATRDGLRAVKNAVEDNCLIVGAGAFEVACAAHLRNKFAAKEVKGKAKMGVYAYA 442
Query: 479 XXXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVK 300
IP+ LA N+ D + L+++ + G + G+D+ +G D + +++ V
Sbjct: 443 DALLIIPKTLAANSSYDTQDAIVALQEEASEG-YKVGLDLKTGMPFDPEVEGIYDNYRVI 501
Query: 299 LNAVSAACEATAQILSVDETIR 234
+ + +A + ++SVD+ +R
Sbjct: 502 RHMLHSATVIASNLISVDQILR 523
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 29.9 bits (64), Expect = 0.48
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -3
Query: 352 ERW--WITLRSACGSRPSSSLTP*VPPA-RPPL 263
E W W T+RSACG P + +PPA PP+
Sbjct: 174 ETWKMWDTIRSACGYHPRLKVALELPPACSPPI 206
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +3
Query: 288 HGVKLDEGRLPHALRKVIHHLSTDNVHTVRVLPSGVLLP*FIEESG 425
H +DEG ALR VI+HL T +V T+R LL I+ G
Sbjct: 305 HTFTIDEGL--DALRDVIYHLETYDVTTIRASTPMYLLSRKIKAQG 348
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 27.1 bits (57), Expect = 3.4
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = -2
Query: 653 LEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSXQLAGKEQLXXXXXXXX 474
+ E + + DA+ V+ + ++ V+ G G + A LR +Q
Sbjct: 421 VNEKKDRIVDALNAVKAAV-SEGVLPGAGT--SFVKASLRLGDIPTNNFDQKLGVEIVRK 477
Query: 473 XXAIPRQ-LADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVD 339
P Q + +NAGL+G ++ KL++ + E G D+ VD
Sbjct: 478 AITRPAQTILENAGLEGNLIVGKLKELYGK-EFNIGYDIAKDRFVD 522
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 453 LTRDGLKGSGHCRYSQLLLASQLXRVRPEMGRDLHVYCSSASHYSIILD 599
LT+D L +G C +++ + L V P++ L+ Y + S +D
Sbjct: 1451 LTKDALYTNGSCWELSVIILNFLHHVSPDISTHLYKYYLRRNFVSSFID 1499
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 26.2 bits (55), Expect = 5.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -3
Query: 388 LGSTRTVWTLSVERWWITLRSAC 320
L T TVW + WW+++ + C
Sbjct: 1523 LFGTMTVWVAHLIYWWVSIMALC 1545
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 316 SRPSSSLTP*VPPARPP 266
S PSSS TP PP PP
Sbjct: 3 SAPSSSTTPASPPTSPP 19
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 599 IKNDAVVAGG-GAVDMQISAHLRSHSXQLAGKE 504
+KN +V G +VDMQ++ HL++ + G+E
Sbjct: 19 LKNGTIVHGTITSVDMQMNTHLKAVKMTVKGRE 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,162
Number of Sequences: 5004
Number of extensions: 53603
Number of successful extensions: 143
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -