Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L15
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    29   0.90 
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    29   0.90 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.3  

>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 415 GLKPDDVANTNPS-TSRASQNLPLDRTRDPLKKSSEK 522
           G +  D AN+N + +SR  +NLP + T+D   +SSE+
Sbjct: 78  GFEELDSANSNDAGSSRKRKNLPNENTQDSTSESSEE 114


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -3

Query: 653 HFGSSRSTNSAFRYLKHWSPFSSKPSLATKGSTSKLTLRHSP 528
           +FGS+ S   A  + K++SP S K S  T  +TSK  L  SP
Sbjct: 618 NFGSNNSLRHAKSFSKYYSP-SHKDSNKTSRNTSKEGLPSSP 658


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 661 KHVISDPPDPLTVLLDTSSTGH 596
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,946
Number of Sequences: 5004
Number of extensions: 44057
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)