Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L15
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936...    31   1.2  
10_02_0096 - 5248369-5248479,5248562-5248604,5249093-5249178,525...    28   8.8  
06_01_0475 + 3375757-3375800,3375898-3376168,3376252-3376440,337...    28   8.8  

>09_03_0118 -
           12492206-12492415,12492746-12492816,12493611-12493634,
           12494061-12494114,12494803-12496345
          Length = 633

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 326 LXLFLHSTYYYSLQLMSS--SIVHFYHKIRQF*LTFKISYSTFLNC 195
           + L +HST+     L+S   SI+ + HK  +   TF + YS F NC
Sbjct: 546 ISLAIHSTFLRVKYLLSCNLSILKYGHKFHRCIHTFGLLYSVFFNC 591


>10_02_0096 -
           5248369-5248479,5248562-5248604,5249093-5249178,
           5250089-5250153,5252539-5252747,5253077-5253188,
           5253271-5253322,5254593-5254685,5254997-5255146,
           5255223-5255327,5255858-5255891,5256145-5256281,
           5257691-5257819,5257899-5257977,5258081-5258156,
           5258981-5259070,5259181-5259259,5259397-5259431,
           5260722-5260811,5260913-5261027
          Length = 629

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 650 FGSSRSTNSAFRYLKHWSPFSSKPSL 573
           +GS    +S+ + +  WSPFSSK  L
Sbjct: 203 YGSQGDWDSSLKIILEWSPFSSKEEL 228


>06_01_0475 +
           3375757-3375800,3375898-3376168,3376252-3376440,
           3376816-3376989,3378039-3378218,3378565-3378719,
           3379509-3379599,3380023-3380186,3380791-3380845,
           3380944-3381066,3381160-3381255,3381706-3381833,
           3382407-3382466,3382607-3382896,3383127-3383237,
           3383318-3383395,3383487-3383659,3384192-3384296,
           3385017-3385112
          Length = 860

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -1

Query: 682 GSSRRRPKHVISDPPDPLTVLLDTSS 605
           GSS + P  V   PP PL  LLD SS
Sbjct: 616 GSSLKLPNGVAKPPPAPLADLLDLSS 641


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,801,109
Number of Sequences: 37544
Number of extensions: 261054
Number of successful extensions: 600
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)