Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_L14
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 60 2e-09
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 47 2e-05
08_02_0742 - 20630313-20630798 36 0.051
12_02_0674 - 21745321-21746223,21746229-21747608 30 1.9
02_01_0513 + 3715406-3715543,3716298-3716708,3716882-3717085,371... 30 1.9
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 30 2.5
05_04_0146 + 18393447-18394043 29 3.3
02_05_0713 + 31159574-31160764 29 5.8
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 29 5.8
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 28 7.7
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 28 7.7
01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162 28 7.7
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/91 (32%), Positives = 47/91 (51%)
Frame = -1
Query: 697 YAEYKYPRGLAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKEL 518
+ +YKY F++ N + G QR+D RK AF + + G + + G+W++RG E+
Sbjct: 312 FCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEI 371
Query: 517 VFPLSSDWQVDYESYDWKKLDPSSEETKKLV 425
D D E Y+W K+D S E K+ V
Sbjct: 372 P-KFVMDEVYDMELYEWTKVDISDEAQKERV 401
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/91 (32%), Positives = 47/91 (51%)
Frame = -1
Query: 697 YAEYKYPRGLAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKEL 518
+ +YKY F++ N + G QR+D RK AF + + G + + G+W++RG E+
Sbjct: 877 FCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEI 936
Query: 517 VFPLSSDWQVDYESYDWKKLDPSSEETKKLV 425
D D E Y+W K+D S E K+ V
Sbjct: 937 P-KFVMDEVYDMELYEWTKVDISDEAQKERV 966
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 46.8 bits (106), Expect = 2e-05
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Frame = -1
Query: 697 YAEYKYPRGLAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKEL 518
+ +YKY F++ N +R+D RK AF + + G + G+W++RG+++
Sbjct: 329 FCDYKYNDENTVSFVTMN------KRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDI 382
Query: 517 VFPLSSDWQVDYESYDWKKLDPSSEETKK----LVQDYFSWNGTD 395
D D E Y+W K+D S E K+ +++D + G D
Sbjct: 383 P-KFVMDEVYDMELYEWTKVDLSDEAQKERVNAMIEDQEPFEGED 426
>08_02_0742 - 20630313-20630798
Length = 161
Score = 35.5 bits (78), Expect = 0.051
Identities = 20/82 (24%), Positives = 33/82 (40%)
Frame = -2
Query: 588 PSACLVKTTIPPSLECGCGAERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSR 409
P ++++ PP C CG S + + T P++ ARR R +
Sbjct: 25 PDPPSLRSSTPPDPSCHCGPSAGSTAAEVPHAGYATPPSSSHGEEEAARRRRRGRGEEAD 84
Query: 408 GTEPTKTVESSTRARYSSECRP 343
G +P + V + + R CRP
Sbjct: 85 GVDPVRAVTTKRQRRGGRRCRP 106
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 30.3 bits (65), Expect = 1.9
Identities = 53/201 (26%), Positives = 75/201 (37%), Gaps = 14/201 (6%)
Frame = -2
Query: 714 PRLSIXMLNTNT-PEDSLKCS*AVTLLRVCSRG*TKCANRLSHPSACLVKTTIPPSLECG 538
PR S+ +T+ P C + ++ S T C + LS + T L
Sbjct: 544 PRTSLLSSSTSKIPSTPSTCELSTATGKIPS---TTCTSPLSTATGKTSSTPSTSPLSTS 600
Query: 537 CGAERSSCSRCRLIGRWTTSPTTGRNWILRA--------RRPRNLSRTTSR-GTEPTKTV 385
S+ S L PTT R L R +LS TS+ T P +
Sbjct: 601 TSKTSSTPSTSPLSSSTIKIPTTARTGELSTPTDKIPTTTRAGDLSTATSKIPTAPGTSE 660
Query: 384 ESSTRARYSS-ECR---PTSSQCIHISYNNYKKTLQKRNIQM*IGGCWQFSELSSIYTIF 217
S+T ++ SS C TS+ I + K T + G C +FS +S +T
Sbjct: 661 LSTTTSKISSTSCAGQFSTSTYGIPTTTCTSKLTASSCKVSSPTGAC-KFSTSTSTFT-- 717
Query: 216 IKTSVINDFQSPCSAVPKTTR 154
TS ND + S P TTR
Sbjct: 718 -PTSFSNDLTASTSTFPTTTR 737
>02_01_0513 +
3715406-3715543,3716298-3716708,3716882-3717085,
3717552-3717729,3717833-3717951
Length = 349
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 335 LDVGRHSLEYL-ALVELSTVFVGSVPREVVLDKFLGLLARRIQFLPVVGLVVHLPIRRQR 511
+D+ HS++ + + T+ ++PRE V D F+ L A + LP +V +RRQ
Sbjct: 114 IDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFICLTASSLAELPAGSVVGSASLRRQS 173
Query: 512 E 514
+
Sbjct: 174 Q 174
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 516 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 629
T +P T V + PN D CL IL N W+
Sbjct: 84 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 121
>05_04_0146 + 18393447-18394043
Length = 198
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -2
Query: 627 SRG*TKCANRLSHPSACLVKTTIPPSLECGCGAERSSCSRCRLIGRWTTSP---TTGRNW 457
+RG TK A + +A + + E GC A RS+CS L G TT+P TG W
Sbjct: 113 ARGRTKAAVAPAAAAAVVAAASAGGGREMGCRAGRSTCS---LHGTTTTTPRWRQTGGPW 169
Query: 456 ILRARR 439
R +
Sbjct: 170 RRRQNK 175
>02_05_0713 + 31159574-31160764
Length = 396
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = -1
Query: 586 VCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKKLDPSSEET 437
+C + + ++S +W W + P SD + S+ W K D + +++
Sbjct: 345 ICAKSKGESFSMSKIWQWSNVKGKLPAGSDNCSETASFPWMKRDATGDKS 394
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 528 ERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTRARYSSE 352
ER +C + WT S W+L+ R P LS S+ ++ ++ + S+E
Sbjct: 137 ERGERGKCSMWTLWTHSQLVVVGWLLKRRPPTKLSELESQLSQLQDELKKAKEQLLSTE 195
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 600 RLSHPSACLVKTTIPPSLECGCGAERSSCSRCRLI 496
R HP++ LV+ T PP G G S SR RL+
Sbjct: 30 RAGHPTSALVRATAPPPPATGGG---GSSSRARLL 61
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -2
Query: 594 SHPSACLVKTTIPPSLECGCGAERSSC 514
SH C+ K PP CGC +C
Sbjct: 206 SHAFVCVCKPAPPPPPPCGCSGGHGNC 232
>01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162
Length = 708
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 549 EMVELLSSPNRQTDAKACLRILSNLWNIPVIRLQLMNTLA 668
+ ELL N AKA + ++ +LW P I+L LM LA
Sbjct: 426 QATELLEYENPAAAAKAIVAMVKSLW--PSIKLHLMEILA 463
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,169,149
Number of Sequences: 37544
Number of extensions: 434578
Number of successful extensions: 1122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -