Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_L13
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 30 0.33
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.3
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 27 3.1
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 5.4
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 26 5.4
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 9.4
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 9.4
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 25 9.4
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.3 bits (65), Expect = 0.33
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -1
Query: 605 TSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLAST-TTA*PGETEKTTPATMSAG 429
TSS ++S A SNS +++ SSS N T + +++ST +++ P + +T A SA
Sbjct: 209 TSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSAS 268
Query: 428 DSS 420
+S
Sbjct: 269 ATS 271
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/69 (34%), Positives = 35/69 (50%)
Frame = -1
Query: 605 TSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMSAGD 426
TSS ++S A SNS +++ SSS N T T A+ T++ T + AT S+
Sbjct: 177 TSSSLSSTAASNSATSSSLASSSLNST--------TSATATSSSLSSTAASNSATSSSLA 228
Query: 425 SSLFGKTTT 399
SS TT+
Sbjct: 229 SSSLNSTTS 237
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 2.3
Identities = 21/64 (32%), Positives = 38/64 (59%)
Frame = -1
Query: 611 PRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMSA 432
P TSS +S ++S+S S++ SSS++ S+++ T++S+T T TP++ S+
Sbjct: 209 PITSSTSSSHSSSSSSSSS---SSSSSRPSSSSSFITTMSSSTFI---STVTVTPSSSSS 262
Query: 431 GDSS 420
SS
Sbjct: 263 STSS 266
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = -1
Query: 683 VSRLVSQGIKNTHVVRVQAVARGPPRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWM 504
+ RL S K ++ + G P +++ S +N +S STN S + TI + M
Sbjct: 111 IDRLSSPNAKAGDILASSLFSSGSPPDTTRRNSTSNLSSVSTN----SDKSRTIGSNYNM 166
Query: 503 LTLASTTTA*PGETEKTTPAT 441
L +T + ++ +TP+T
Sbjct: 167 LQSTKSTASQRRMSDSSTPST 187
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = +2
Query: 110 YEAVVLGVVGDCPVAPPHKAVPXMSPRSRPASVPAGTPGFSMRNSCWSPTFTGYKDQVCL 289
+E V G+ P + H A P P S S TP S ++ +P +++
Sbjct: 38 WECPVRGLTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYG 97
Query: 290 FSLEPFDPQ 316
+ +P+ PQ
Sbjct: 98 AAPQPYPPQ 106
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 345 NVDSYGDRKTWGSNGSS 295
N SYG T+GSNGSS
Sbjct: 72 NYGSYGASNTYGSNGSS 88
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/61 (26%), Positives = 36/61 (59%)
Frame = -1
Query: 614 PPRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMS 435
P +SSK +S + S+S S++ SSS++ + S+ + +S ++A P ++ ++ + S
Sbjct: 165 PSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSS 224
Query: 434 A 432
+
Sbjct: 225 S 225
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = -1
Query: 257 WETNSCSSSRXREYRQGLKLDANVDSXRGPPCVGEQRDSRRQPRVLRLHNPAVA 96
W +CS + R+ K +ANVD+ E + +++ +L+ HN A++
Sbjct: 303 WTCATCSFATQRKKSTFQKENANVDANHATENNLEGQATQKSVSILKGHNKALS 356
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 185 PRSRPASV-PAGTPGFSMRNSCWSPTFTGYKDQVCLFSLEP 304
PR+R +S+ P TP + + S + TF+ ++Q L ++ P
Sbjct: 193 PRARTSSLTPGNTPNSAKQWSAFRSTFSPLREQDQLSTISP 233
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 145 SRCSPTQGGPRYESTFASSFSP 210
S+ S TQ PR ST A SF P
Sbjct: 135 SKYSITQDSPRVSSTIAYSFKP 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,316
Number of Sequences: 5004
Number of extensions: 56931
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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