Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_L13
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0302 - 29091666-29092331 31 0.79
12_02_0887 + 24018847-24019281 30 1.8
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 29 3.2
03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,100... 29 3.2
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 29 3.2
07_01_0947 + 7982783-7983619,7983713-7983859,7983953-7984318 29 4.2
04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032... 29 5.6
03_05_0850 + 28206166-28206767,28207648-28207891,28208076-282083... 29 5.6
03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269 29 5.6
12_02_0282 - 16749358-16749445,16749640-16749695,16749965-167501... 28 9.8
>05_07_0302 - 29091666-29092331
Length = 221
Score = 31.5 bits (68), Expect = 0.79
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 191 NVDSXRGPPCVGEQRDSRRQPRVLRLHNPAVAVTPFW 81
N RGP QR + ++P LR P A +PFW
Sbjct: 183 NKSKGRGPLARAPQRPNLQKPNSLRPTRPQAAASPFW 219
>12_02_0887 + 24018847-24019281
Length = 144
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 149 VAPPHKAVPXMSPRSRPASVPAGTPGFSMRNSCWSPTFTGYK 274
VAP H+ VP + SR A PG R++ W+ T K
Sbjct: 51 VAPVHRIVPRPNSVSRQVRPSAANPGIRQRHARWARDSTPVK 92
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 24 CCDKVYCNMVRCSGAVVWDPEGCHCHG 104
C +K+ C+ CS W C CHG
Sbjct: 522 CSEKLACSCPHCSCKNTWGSFDCSCHG 548
>03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,
1008103-1008273,1008405-1008553,1008780-1008927,
1009015-1009083,1009168-1009416,1009516-1009710,
1009869-1009985,1010205-1011329
Length = 921
Score = 29.5 bits (63), Expect = 3.2
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
Frame = -3
Query: 528 YNQALKLDANVGEYNDRLTWGDGKDYTSHHVSWRLISLW-ENNNVIFKILNTEYEMYLKL 352
Y A L A G+ ND L + D+T + W +SLW E+ + + + +
Sbjct: 795 YTWANMLSAPRGQVNDPLITQNSTDFTVALMDWFWMSLWAEHIGAVEESFSCPESLECTR 854
Query: 351 DVNVDSYGDRKTWGSNGSSEKRHTWSLYPVKVGDQQLFLIEXPGVPAGTEAGRERGLIXG 172
V + + + S+ SE R YPV V + + PG A + G G I G
Sbjct: 855 QVRHIGEQNWRQFASSEVSEMRGHLVKYPVSVA-RDGKVKPLPGCAAFPDLG---GNICG 910
Query: 171 TAL 163
T L
Sbjct: 911 TFL 913
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/78 (20%), Positives = 34/78 (43%)
Frame = -3
Query: 483 DRLTWGDGKDYTSHHVSWRLISLWENNNVIFKILNTEYEMYLKLDVNVDSYGDRKTWGSN 304
D+ +WG+ S +W + + N + ++ + V+ + D+++WG+
Sbjct: 1729 DKESWGNVPASPSDS-AWNAAPVSQGNESSDAKQSDSWDGWKSAGVDASTNKDKESWGNV 1787
Query: 303 GSSEKRHTWSLYPVKVGD 250
+S W+ PV GD
Sbjct: 1788 PASPSDSAWNAAPVSQGD 1805
>07_01_0947 + 7982783-7983619,7983713-7983859,7983953-7984318
Length = 449
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +1
Query: 76 GIQKGVTATAGL*SRSTRGCRRLSRCSPT 162
G+ G A L R RGCRRLS SPT
Sbjct: 186 GVLAGCAALDCLLLRGVRGCRRLSISSPT 214
>04_04_1676 -
35302498-35302836,35302911-35302997,35303063-35303286,
35303375-35303675,35303762-35303860,35304895-35305032,
35305108-35305326
Length = 468
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 137 GDCPVAPPHKAVPXMSPRSRPASVPAGTP 223
G C ++ P A P M+ S PA+ PA P
Sbjct: 362 GSCSLSSPPAAPPKMAAASPPAAAPAPAP 390
>03_05_0850 +
28206166-28206767,28207648-28207891,28208076-28208389,
28209013-28209067
Length = 404
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 146 PVAPPHKAVPXMSPRSRPASVPAGTP 223
P PP + P +SP S P S+ + TP
Sbjct: 10 PSLPPSSSSPRISPHSTPVSLTSATP 35
>03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269
Length = 309
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 137 GDCPVAPPHKAVPXMSPRSRPASVPA 214
GD P + P A P SP S A+VPA
Sbjct: 57 GDSPTSSPAPAAPWESPTSGAATVPA 82
>12_02_0282 -
16749358-16749445,16749640-16749695,16749965-16750137,
16750768-16750924,16751279-16751422,16751959-16752134,
16753024-16753045,16753845-16753937,16754259-16754431,
16754550-16754760
Length = 430
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 725 VXSTXRGSDVCRDVVSRLVSQGIKNTHVVRVQAVARG 615
V S+ G+ D+ R++ G NTHV Q +ARG
Sbjct: 50 VLSSFPGAAATVDLAGRILLPGFVNTHVHTSQQLARG 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,699,384
Number of Sequences: 37544
Number of extensions: 436339
Number of successful extensions: 1409
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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