Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L12
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    30   0.37 
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    29   0.65 
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    28   1.5  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    28   2.0  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   6.1  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    26   8.0  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   8.0  

>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 30/125 (24%), Positives = 53/125 (42%)
 Frame = -2

Query: 646 KIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANRADIISVYMKGNYILHSE 467
           KI+ L+C++CN +   NR+       + +H        LN   AD I    +    + +E
Sbjct: 91  KIKSLQCLFCNNEGLLNRQ---EWFEHSFHVHG-----LNIGLADNIVYINRLLEKIKNE 142

Query: 466 GASFTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKHNINMLAKNKYVYY 287
             SF C+ C+    + + L  H+ +  HF   P +     +Y+     IN  +  K +  
Sbjct: 143 LESFRCLCCHVPCKNKKLLREHMNNKRHFRLDPKSSEYDEFYI-----INYASVTKSITI 197

Query: 286 SFGRF 272
           S  +F
Sbjct: 198 SHSQF 202


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 17/82 (20%), Positives = 32/82 (39%)
 Frame = -2

Query: 628 CVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANRADIISVYMKGNYILHSEGASFTC 449
           C++C   F       KH  ++  H   + E +   +   +       +Y+       FTC
Sbjct: 210 CLFCAASFSSFDTCKKHMKAS--HSLYIPEREYLVDEPSLF------DYLAEKISIGFTC 261

Query: 448 VNCNGVFNSIRSLLMHLVHAEH 383
           + CN  F S+ ++  H+    H
Sbjct: 262 LTCNREFKSLEAVRAHMQQKGH 283



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
 Frame = -2

Query: 460 SFTCVNCNGVFNSIRSLLMHLVHAEHF-------AYRPP--AECTFRYYLELKHNINMLA 308
           SF C  C   FN+  S  +H     H        A  PP  AE      L ++   N   
Sbjct: 4   SFACTTCTVAFNNAESQKIHWKSDWHHYNLKRKVASLPPLSAEVFAGKILSIQKQ-NEEV 62

Query: 307 KNKYVYYSFGRFKCGVCDADIEEGENAKRHVLSPKHRENM 188
           + K  +Y      C VC+           H+ S KHR+N+
Sbjct: 63  QKKAEFYQ----NCEVCNKKFYSEGAYSSHMASKKHRDNL 98


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/67 (29%), Positives = 26/67 (38%)
 Frame = -2

Query: 610 DFRDNREAVKHALSNVYHQSAVAETKLNANRADIISVYMKGNYILHSEGASFTCVNCNGV 431
           D   N E  K  + N Y       TKL   +A + S   +GN +L S        N NG 
Sbjct: 595 DVSKNIERKKETVHNTYRNLMSNRTKLEEMKASLSSSRSRGN-VLESLQRLHESDNLNGF 653

Query: 430 FNSIRSL 410
           F  +  L
Sbjct: 654 FGRLGDL 660


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 381 KCSACTKCIKSDRIELNTP 437
           KC+ C +CI+SD +  N P
Sbjct: 179 KCNLCYECIESDELRANCP 197


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +2

Query: 404 HQKRPNRIEYAIAIDARKGRSFAVQDVISLHVNA-YDI---RSVRVQLRLRDGALVVHIR 571
           H K P      + +++R GR   VQD +  H +  +D+   ++ R+ L     + V  I 
Sbjct: 486 HHKNPKCRAKKLVVESRNGRREYVQDAVRRHGDVIWDVLSHKNGRIYLCGSGNSFVSEIE 545

Query: 572 KRMFD 586
           K + D
Sbjct: 546 KALMD 550


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +1

Query: 619 NKRISDLRFYSVPQXVCRLRCSRPDGXVXLRXPWCXLLSKC 741
           N  I +L+   + + +   R + PD    +  PW  ++S+C
Sbjct: 127 NPSIFELQAQKIKKSLALARAAFPDQEASISIPWYIMVSEC 167


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 331 LIRDNNGRCTPPAVCKQSARRALNASKATESN*IRHCN 444
           +IR+NN +  P  V K  A + L A +  +   I HC+
Sbjct: 607 VIRENNYKGLPLIVVKSFALQGLQALRLLQGQNIIHCD 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,112
Number of Sequences: 5004
Number of extensions: 59915
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)