Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_L11
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888... 50 3e-06
05_03_0079 + 8212648-8212724,8212844-8212993,8213211-8213351,821... 34 0.13
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 31 1.2
02_05_0114 + 25958834-25961296 31 1.2
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287... 30 2.8
04_01_0041 - 464695-464850,467485-469029 29 3.6
07_01_0586 - 4354613-4354996,4355537-4355662,4355752-4355827,435... 29 4.8
09_01_0019 + 403078-404211 29 6.4
05_05_0208 + 23275931-23275996,23276084-23276196,23276279-232764... 29 6.4
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 29 6.4
08_02_1243 - 25527523-25527960,25527993-25528604 28 8.4
06_01_0809 - 6100025-6100251,6100456-6100565,6100919-6100986,610... 28 8.4
06_01_0653 - 4720913-4721152,4721898-4721966,4722059-4722124,472... 28 8.4
06_01_0005 - 125809-126339 28 8.4
03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672 28 8.4
>12_02_0768 -
22988119-22988223,22988337-22988558,22988645-22988810,
22989176-22989181,22989281-22989453,22989737-22989928,
22990034-22990211,22990302-22990444,22990666-22990755,
22990869-22990991,22991391-22991568,22992213-22992442,
22992557-22992616,22992731-22992798,22992908-22992953
Length = 659
Score = 49.6 bits (113), Expect = 3e-06
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = -2
Query: 428 SDVVEKEDVSEAIRLVEMSKQSLQHVEENVQRGITSTDRIFAIVRDLAGSNKT--VKVAD 255
S+ V + DV EA+RL++MSK SL + ++ + G+ + I++I+RD A + V+ A
Sbjct: 559 SETVAQSDVDEALRLMQMSKYSL-YSDDRQRSGLDAISDIYSILRDEAARTNSMDVRYAH 617
Query: 254 VIERCVDKGFKPDQVDACIEEXREL 180
+ KG+ Q+ C+EE L
Sbjct: 618 ALNLISRKGYSEAQLKECLEEYASL 642
Score = 39.1 bits (87), Expect = 0.005
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = -3
Query: 613 RRYVALTKRKEPAVPRALAEYIVSSYVELRR-EARNARDVTFTSART 476
R Y++ +R P+VPR L EYI ++Y +R+ EA++ ++T+ RT
Sbjct: 496 RAYISTARRVVPSVPRELEEYIATAYSSIRQEEAKSNAPHSYTTIRT 542
>05_03_0079 +
8212648-8212724,8212844-8212993,8213211-8213351,
8213658-8213820,8213901-8214094,8214174-8214369,
8214462-8214539,8214933-8215162,8215574-8215688,
8215878-8215952,8216032-8216172,8216309-8216512,
8216586-8216747,8216787-8216794,8217099-8217223,
8217316-8217438,8218177-8218307,8218527-8218658
Length = 814
Score = 34.3 bits (75), Expect = 0.13
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = -3
Query: 694 LAKHIAYXHQHXTQPPSXVRALSMKLVRRYVALTKRKEPAVPRALAEYIVSSYVELRR 521
+A HI HQ + + A S ++RY+A K +P + + +V SYV LRR
Sbjct: 551 IAHHIVRVHQKREE--ALAPAFSTAELKRYIAFAKSLKPQLSSEAKKVLVESYVTLRR 606
>11_06_0621 + 25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 350 EENVQRGITSTDRIF-AIVRDLAGSNKTVKVADVIERCVDKGFKPDQV 210
+E +Q+G+T + A++ + K D+++ +DKG +PD++
Sbjct: 872 DEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDEL 919
>02_05_0114 + 25958834-25961296
Length = 820
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 350 EENVQRGITSTDRIF-AIVRDLAGSNKTVKVADVIERCVDKGFKPDQV 210
+E +Q+G+T + A++ + K D+++ +DKG +PD++
Sbjct: 754 DEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDEL 801
>09_04_0593 -
18825741-18826702,18826994-18827875,18828687-18828775,
18828942-18829080,18829405-18829531,18829629-18829838
Length = 802
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 594 PSARSPPCRARSPNTSSPHTSSYG 523
P RS PCRARSP++SS + G
Sbjct: 50 PHTRSLPCRARSPSSSSSSNVNSG 73
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +3
Query: 87 QLVPRRRTLREADRHHMNVILVRTWFTCHTFKFSXFFDASVHLIWFESFVDAPLDDIGDF 266
QLVP L +++ ++ + VR+W C FKFS + S W + VDAP F
Sbjct: 213 QLVPSYN-LAQSENENLLIQQVRSW--CR-FKFSANYFLSKPYQWRKYMVDAPTYQGFHF 268
Query: 267 DGLV 278
G++
Sbjct: 269 QGMI 272
>07_01_0586 -
4354613-4354996,4355537-4355662,4355752-4355827,
4356444-4356651,4356813-4356906,4357430-4357504,
4358200-4358622
Length = 461
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -2
Query: 425 DVVEKEDVSEAIRLVEMSKQSLQHVEENVQRGITSTDRIFAIVRDLAGSNKTVKV 261
D VEK D ++ ++L + SLQH++ G S++ A L +N+ V +
Sbjct: 404 DSVEKIDPTDPVQLQQQQMASLQHLQNRACGGGASSNEYTAWGSSLMDANELVNM 458
>09_01_0019 + 403078-404211
Length = 377
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 348 RKRSEGYNVNGPYIRDSARPGRLQQDRQSRRCHREVRRQRIQTRSGGRLHRR 193
RKR E + + D R + ++DR+ RR HR + SGG RR
Sbjct: 257 RKRHERSDEDSESDSDKKRHRKSRKDRKRRRSHRRSDDTSDEDESGGEDRRR 308
>05_05_0208 +
23275931-23275996,23276084-23276196,23276279-23276459,
23276590-23276674,23276974-23277104,23277194-23277432,
23277512-23277748,23277838-23277992,23278039-23278271,
23278359-23278521,23278613-23278818,23278960-23279019,
23279106-23279198,23279406-23279569,23280070-23280138,
23280241-23280382,23280490-23280546
Length = 797
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 631 LSMKLVRRYVALTKRK-EPAVPRALAEYIVSSYVELRREARNAR 503
L++K +++Y+ K +P + +++I +SY ELR NA+
Sbjct: 580 LTVKFLKKYIHYAKNLIQPRLTDEASDHIATSYAELRDGGANAK 623
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 329 YPSERFLPRVVGIALTSPRDELPQIRPPFQRR 424
+P E PRVV A R+ PQIRPP +RR
Sbjct: 1070 FPVEEKRPRVVAEA--QERETGPQIRPPCRRR 1099
>08_02_1243 - 25527523-25527960,25527993-25528604
Length = 349
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 646 WAAGSNAGAXTLCASPALKSFSRMGLSC 729
W S+ GA T+C+SP +S + G C
Sbjct: 87 WCTPSSRGAPTMCSSPPTQSAAPPGSRC 114
>06_01_0809 -
6100025-6100251,6100456-6100565,6100919-6100986,
6101108-6101229,6101446-6101527,6101629-6101695,
6102811-6102883,6103032-6103148,6104167-6104259,
6104430-6104495,6105121-6105218,6105917-6106016,
6106486-6106660,6106828-6106894,6107574-6107712,
6107830-6107926,6107992-6108130,6108212-6108363
Length = 663
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 658 TQPPSXVRALSMKLVRRYVALTKRKEPAVPRALAEYIVSSYVELRREA--RNA 506
T P + LSM +RRY+ K+ V AE ++SSY + +R++ RNA
Sbjct: 538 TSDPEVMWTLSM--LRRYIHYVKQHFKPVLTKEAERVISSYYQRQRQSGTRNA 588
>06_01_0653 -
4720913-4721152,4721898-4721966,4722059-4722124,
4722814-4722879,4723001-4723162,4723255-4723347,
4723449-4723541,4723626-4724273
Length = 478
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -1
Query: 615 SGATWRSPSARSPPCRARSPNTSSPHTSSYGVKLGTHVTSHSRQ-PGLARHTAPLDRTRK 439
SG+ A+ PP ++ P H S Y + + V + PG + + P R R+
Sbjct: 261 SGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINHSSDVEPQANSAPGNSANAKPRTRARR 320
Query: 438 AQ 433
Q
Sbjct: 321 GQ 322
>06_01_0005 - 125809-126339
Length = 176
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -1
Query: 306 RDSAR-PGRLQQDRQSRRCHREVRRQRIQTRSGGRLHRR 193
RD R P R R RCHR RR+ + R GG R
Sbjct: 138 RDPGRVPARGGDPRDQWRCHRRWRRRARRGRGGGTTRSR 176
>03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672
Length = 242
Score = 28.3 bits (60), Expect = 8.4
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 315 PYIRDSARPGRLQQDRQSRRCHREVRRQRIQTRSGGRL-HRRIXRT*TCGK*TRCG 151
P+ R AR GR + +R R RR+R +TR R RR R TCG RCG
Sbjct: 146 PWRRGGAR-GRAEVVVAGKR-RRSWRRRRSRTRQRRRRSRRRRRRRRTCGGGGRCG 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,926,948
Number of Sequences: 37544
Number of extensions: 381960
Number of successful extensions: 1401
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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