Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L10
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    40   4e-04
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    31   0.15 
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    29   1.1  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    29   1.1  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    29   1.1  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    28   1.4  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    28   1.8  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    28   1.8  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    27   3.2  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   7.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.5  

>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -2

Query: 631 SLRYCPTGEWLAVGMENSNVEVLHAVKPDKYQLHLHESCVLSLRFASCGKWFVSTGKDNL 452
           ++ + P G+++A G  +  + +  +      QLH HE  V S+ F+  GK+ VS   DN 
Sbjct: 422 TVMFSPDGQFIAAGSLDKVIRIWTSSGTLVEQLHGHEESVYSVAFSPDGKYLVSGSLDNT 481

Query: 451 LNAW 440
           +  W
Sbjct: 482 IKLW 485



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
 Frame = -2

Query: 631 SLRYCPTGEWLAVGMENSNVEVLHAVKPDKYQLHL-HESCVLSLRFASCGKWFVSTGKDN 455
           S+ + P G++LA G+E+  + +    +   Y+L   HE  + SL F+  GK  VS   D 
Sbjct: 339 SVAFSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDR 398

Query: 454 LLNAWRTPYGASIFQSKGXXXXXXXXXXXXDKYIVTGSGDKKATVY 317
            +  W    G                     ++I  GS DK   ++
Sbjct: 399 TVCLWDVEAGEQKLILHTDDGVTTVMFSPDGQFIAAGSLDKVIRIW 444


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
 Frame = -2

Query: 565 LHAVKPD---KYQLHLHESCVLSLRFASCGKWFVSTGKDNLLNAWRTPYGASIFQSKG-X 398
           L A+KP+   K     H   VLS+  +   +W +S  KD  +  W    G S    +G  
Sbjct: 521 LSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHK 580

Query: 397 XXXXXXXXXXXDKYIVTGSGDKKATVYEV 311
                       +   +GSGD +A ++ +
Sbjct: 581 NSVISVCFSPDGRQFASGSGDLRARIWSI 609


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = -2

Query: 580 SNVEVLHAVKPDKYQ----LHLHESCVLSLRFASCGKWFVSTGKDNLLNAW 440
           SN E +  +  D  Q    L  H   VL+L  +  G W  +  KDN +  W
Sbjct: 341 SNTEFIDVISTDGTQVFGVLEGHTDIVLTLDSSEDGVWLATGAKDNTVRLW 391


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -2

Query: 631 SLRYCPTGEWLAVGMENSNVEVLHAVKPDKY-QLHLHESCVLSLRFASCGKWFVSTGKDN 455
           SL   P G     G+EN  +        ++  +   H S V +L+F   G W V T  D+
Sbjct: 338 SLAVHPDGNLFVAGLENGELRFFETSSGNELTKFGPHSSPVKTLQFGENGYWLVVTTNDD 397


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = -2

Query: 601 LAVGMENSNVEVLHAVKPDKYQLHLHESCVLSLRFASCGKWFVSTGKDNLLNAWR 437
           ++VG+++S +           ++  H+S V  + F   GK+F +   D  +  WR
Sbjct: 150 VSVGLDSSIIVWNGTTFERLKRIEAHQSHVKGITFDPAGKYFATESDDRTIKVWR 204


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 541 YQLHLHESCVLSLRFASCGKWFVSTGKDNLLNAWR 437
           Y+LH H S V SL +    +   S G+D  +  W+
Sbjct: 209 YELHGHTSFVYSLTYIHNQQLIASCGEDRTIRIWK 243


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -2

Query: 616 PTGEWLAVGMENSNVEVLHAVKPDK--YQLHLHESCVLSLRFASCGKWFVSTGKDNLLNA 443
           P G WLA G E  N+  + ++K     Y    H   +  L+F++ G    +   D  + A
Sbjct: 86  PCGSWLAAGTEKGNL-YIWSLKSGALIYFFRAHYQPLTILKFSNDGMVLFTASNDGDVFA 144

Query: 442 W 440
           W
Sbjct: 145 W 145


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 526 HESCVLSLRFASCGKWFVSTGKDNLLNAW 440
           HE     L+F+S G++  S  +D  L  W
Sbjct: 193 HEGACFDLKFSSDGRYLCSVSEDRTLRLW 221


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 526 HESCVLSLRFASCGKWFVSTGKDNLLNAWRTPY 428
           H S V SL F+   K  VS G D  +N W   Y
Sbjct: 570 HSSIVYSLSFSYDNKILVSGGADTDVNFWDLTY 602


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 193 GKPVCTYATCLYRLVCAIYVYL 128
           G+ +   AT L+ +VCAIY Y+
Sbjct: 193 GRLILLDATLLFSMVCAIYCYV 214


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 178  YIQASRFNLYIHYNYVSLYSTFAERSLLH*HSHIVR 285
            Y +AS F+LY+ Y   +L  + +  +L+H    I+R
Sbjct: 1074 YDRASAFSLYMIYRLETLRDSSSALTLMHYFDEIIR 1109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,651
Number of Sequences: 5004
Number of extensions: 49273
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)