Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_L09
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0095 + 15979884-15980234 32 0.62
01_06_0310 - 28376378-28376607,28376789-28376897 31 0.82
11_01_0738 - 6218730-6220173,6221969-6223056 31 1.4
01_01_0118 - 871481-872606,872795-872950,873051-873817 31 1.4
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464... 30 1.9
02_01_0182 + 1245577-1245670,1245928-1246017,1246258-1246290,124... 30 2.5
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960... 29 3.3
01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77... 29 3.3
10_08_0669 + 19742140-19742189,19742886-19742923,19744260-197444... 29 4.4
08_02_0825 - 21570628-21570715,21571436-21571812,21572364-215727... 29 5.8
>01_04_0095 + 15979884-15980234
Length = 116
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -3
Query: 338 PVPAGSPRESHCCTLRARDDNNSKRLASRQTCH-QLYEELSAGRGRAGPC 192
P P SP S CC R+R S L + H +L E + G AG C
Sbjct: 33 PCPGASPMASPCCRTRSRARTGSTSLGAVAHRHVELREGVGHGGDEAGAC 82
>01_06_0310 - 28376378-28376607,28376789-28376897
Length = 112
Score = 31.5 bits (68), Expect = 0.82
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1
Query: 475 NLRSDASLSHGEHHVAAAPARNASENVLIVCARWKEGHTGYMAVYNPSRQDLHA 314
+L + A+ H AA P R+ ++ W E GY+ VY+ +L A
Sbjct: 6 SLLAAAAADDARHAQAAGPRRDDDHKAWLLRRAWHEAREGYVVVYDGGGNELSA 59
>11_01_0738 - 6218730-6220173,6221969-6223056
Length = 843
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -2
Query: 381 QDGKRVTPVTWRCTTRPGRISTRISLLYPPCPGR*QFKTSRQPSNLSPT 235
+DGK V C P + I++LY CP R TS+ PSN + T
Sbjct: 312 RDGKHTAYVA--CLVAP--VVAYIAILYIACPSRSPSSTSKSPSNTNTT 356
>01_01_0118 - 871481-872606,872795-872950,873051-873817
Length = 682
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 287 GHGGYSSEIRVEILPGRVVHRHVTGVTLFPSCTNDEYVLACVTRGRGRH 433
G GGY S + +LPG +H + + + +C +E++ T GR H
Sbjct: 366 GQGGYGSVYKGVLLPGD-LHVAIKILNGYSNCNGEEFISEVATIGRIHH 413
>08_02_0502 +
17844775-17845092,17845528-17845634,17846039-17846492,
17846623-17846694,17846804-17846925,17847079-17847294,
17847392-17847500,17847618-17847730,17847916-17848063,
17848274-17848396
Length = 593
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 227 LRIVGDKFDGWRDVLNCYRPGHGGYSSEIRVEILPGRVVHRHVTG 361
+ +VGD W+D + C G Y +EIR+ G+ ++ + G
Sbjct: 470 VELVGDFTSNWKDKVKCDHKGGSRYEAEIRLR--HGKYYYKFIAG 512
>02_01_0182 +
1245577-1245670,1245928-1246017,1246258-1246290,
1246451-1246483,1246657-1246689,1246872-1246904,
1247073-1247105,1247237-1247286
Length = 132
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 453 NDASLRRFTRSKREVSFSSAESCFIFNKGAAGRSIAN 563
N SL+ SKR + F SA SC IF G +G + N
Sbjct: 34 NIFSLKYTPFSKRGLKFGSASSCPIFGSGRSGYNSVN 70
>03_02_0579 -
9606317-9606892,9607571-9607799,9607902-9608011,
9608898-9609275,9609380-9609658,9610044-9610168,
9610269-9610335,9610582-9612006
Length = 1062
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 517 LSADENDTSLLDLVNLRSDASLSHGEH-HVAAAPARNASENVLI 389
LS DEN + + + +DAS++H EH +VA A+ VL+
Sbjct: 435 LSMDENLQMIAKIAAVCNDASIAHSEHQYVATGMPTEAALKVLV 478
>01_01_0103 -
773727-774737,774797-774813,774852-775078,777465-778237
Length = 675
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 278 YRPGHGGYSSEIRVEILPGRVVHRHVTGVTLFPSCTNDEYVLACVTRGRGRH 433
Y G GGY S + LPG VH + + +C ++++ T GR H
Sbjct: 352 YSQGQGGYGSVYKGVFLPGD-VHVAIKMLDGNSNCNGEDFISEVATIGRIHH 402
>10_08_0669 +
19742140-19742189,19742886-19742923,19744260-19744448,
19746402-19748188
Length = 687
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -1
Query: 691 PPSAAPVPVTEDADALASRINKTLGSWPILQLTDTNDDRELASFAMLLPAAPLLNIKQLS 512
PP A + + D DALA +++ L +L T D + A AA ++++L
Sbjct: 227 PPRAGKLQMQSDLDALAGKLDLNLRDCALLIKTGVLSDATVPPVAPAAEAAAQTDVRELL 286
Query: 511 A 509
A
Sbjct: 287 A 287
>08_02_0825 -
21570628-21570715,21571436-21571812,21572364-21572755,
21573943-21574311,21574395-21574580,21574709-21574845,
21575030-21575089,21575206-21575277,21575399-21575542,
21575702-21575773,21575928-21576060,21576157-21576247
Length = 706
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -1
Query: 739 SLPDLILLNHNVSMLRPPSAAPVPVTEDAD----ALASRINKTLGSWPILQLTDTNDDRE 572
+L ++L N+N++ PP +P + D + R+ TLG L+ N++
Sbjct: 95 NLEQVLLQNNNITGRLPPELGALPRLQTLDLSNNRFSGRVPDTLGRLSTLRYLRLNNNSL 154
Query: 571 LASFAMLLPAAPLLNIKQLS 512
+F L P L+ LS
Sbjct: 155 SGAFPSSLAKIPQLSFLDLS 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,306,843
Number of Sequences: 37544
Number of extensions: 397323
Number of successful extensions: 1271
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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