Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_L08
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 122 8e-29
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 89 5e-19
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 88 1e-18
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 81 2e-16
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 79 6e-16
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 69 6e-13
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 51 2e-07
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 50 5e-07
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 49 7e-07
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 48 2e-06
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 44 3e-05
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 43 6e-05
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 41 2e-04
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 41 2e-04
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 41 2e-04
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 41 2e-04
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 40 4e-04
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 40 6e-04
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 35 0.016
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 35 0.016
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 30 0.45
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 26 5.5
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 26 7.3
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 25 9.6
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 25 9.6
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 122 bits (293), Expect = 8e-29
Identities = 75/181 (41%), Positives = 102/181 (56%), Gaps = 3/181 (1%)
Frame = -1
Query: 625 KGPRMVRDVFRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLGLLNQMDGFDQ 446
+GPRMVRDVFR+A+EN+P ATKRFDAQTGADREVQRIL+ LL QMDGFDQ
Sbjct: 211 EGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQ 270
Query: 445 TTNVKVIMATNRADTLDPCVAKTWPSRQKNRVS-TSR*ASKTFDFLDNHYPR*TFRMKWI 269
NVKVIMATNRADTLDP + + P R ++ S + + +
Sbjct: 271 GANVKVIMATNRADTLDPALLR--PGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEV 328
Query: 268 WKSSWLDRTACPAPTSTPSVRRPACTL-XRENRYIVLPKDFEKGYKNNIK-KDESEYEFY 95
+++ R + ++ + A L R++R ++L D E+ Y +K D ++ FY
Sbjct: 329 DLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSDIEEAYARAVKPTDMEQFAFY 388
Query: 94 K 92
K
Sbjct: 389 K 389
Score = 63.3 bits (147), Expect = 4e-11
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEG 621
PG GKTML KAVA+ T A FIRVVGSEFVQKYLGEG
Sbjct: 177 PGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEG 212
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/34 (76%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
Frame = -2
Query: 393 PALLRPGRLDRKIEFP-LPDRRQKRLIFSTITTQ 295
PALLRPGRLDRKIEFP DRRQ+RL+F TIT +
Sbjct: 288 PALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAK 321
Score = 50.8 bits (116), Expect = 2e-07
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = -2
Query: 807 ELPLTHVELYRQIGIEPPRGVLMYGP 730
ELPLT +LYRQIGI+PPRGVL+YGP
Sbjct: 151 ELPLTQGDLYRQIGIDPPRGVLLYGP 176
Score = 46.4 bits (105), Expect = 5e-06
Identities = 23/38 (60%), Positives = 28/38 (73%)
Frame = -3
Query: 296 KMNLSDEVDLEEFVARPDRVSGADINAICQEAGMHAVQ 183
KM LS EVDL+ F+ RPD SGA I AI Q+AG+ AV+
Sbjct: 321 KMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVR 358
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 89.4 bits (212), Expect = 5e-19
Identities = 43/82 (52%), Positives = 52/82 (63%)
Frame = -1
Query: 622 GPRMVRDVFRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLGLLNQMDGFDQT 443
G ++VRD F LAKE SP TKRFD++ DREVQR +L LLNQ+DGF
Sbjct: 263 GAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD 322
Query: 442 TNVKVIMATNRADTLDPCVAKT 377
VKVI ATNR DTLDP + ++
Sbjct: 323 DRVKVIAATNRVDTLDPALLRS 344
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -3
Query: 746 CSCMDXPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQPS 570
C PG GKT+LA+A A + A F+++ + VQ ++G+G F + + P+
Sbjct: 222 CLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPA 280
Score = 39.1 bits (87), Expect = 7e-04
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = -2
Query: 393 PALLRPGRLDRKIEFPLPDRRQK 325
PALLR GRLDRK+EFPLP+ +
Sbjct: 339 PALLRSGRLDRKLEFPLPNEEAR 361
Score = 37.1 bits (82), Expect = 0.003
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -2
Query: 804 LPLTHVELYRQIGIEPPRGVLMYGPXRLWQNYAG*SCCA 688
LP+ + +R++G++PP+G LM+GP + +C A
Sbjct: 203 LPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAA 241
Score = 34.7 bits (76), Expect = 0.016
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 296 KMNLSDEVDLEEFVARPDRVSGADINAICQEAGMHAVQ 183
KM + D+++ EE D +GA + ++C EAGM A++
Sbjct: 371 KMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIALR 408
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 88.2 bits (209), Expect = 1e-18
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Frame = -1
Query: 622 GPRMVRDVFRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLGLLNQMDGFDQT 443
GPR+VR +F A+E+SP TKR+DAQ+GA+RE+QR +L LLNQ+DGFD +
Sbjct: 269 GPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTS 328
Query: 442 -TNVKVIMATNRADTLDPCVAK 380
++KVIMATNR LDP + +
Sbjct: 329 QRDIKVIMATNRISDLDPALIR 350
Score = 62.9 bits (146), Expect = 5e-11
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQPS 570
PG GKT+LAKAVA+ T+A F+RVVGSE +QKYLG+G F + + PS
Sbjct: 234 PGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPS 286
Score = 46.0 bits (104), Expect = 6e-06
Identities = 17/25 (68%), Positives = 23/25 (92%)
Frame = -2
Query: 807 ELPLTHVELYRQIGIEPPRGVLMYG 733
ELPLTH ELY ++GI+PP+GV++YG
Sbjct: 208 ELPLTHPELYEEMGIKPPKGVILYG 232
Score = 42.7 bits (96), Expect = 6e-05
Identities = 21/55 (38%), Positives = 36/55 (65%)
Frame = -3
Query: 296 KMNLSDEVDLEEFVARPDRVSGADINAICQEAGMHAVQGKQIYCPS*RFRKGLQE 132
KMNL ++V+LEE + D +SGA+I AI EAG+ A++ +++ FR+ ++
Sbjct: 378 KMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREK 432
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = -2
Query: 393 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTQ 295
PAL+RPGR+DRKI F PD KR IF+ T++
Sbjct: 346 PALIRPGRIDRKILFENPDEATKRKIFTIHTSK 378
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 80.6 bits (190), Expect = 2e-16
Identities = 40/89 (44%), Positives = 53/89 (59%)
Frame = -1
Query: 616 RMVRDVFRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLGLLNQMDGFDQTTN 437
R++R++F AKE+ P +RF T ADRE+QR L+ LLNQMDGFD
Sbjct: 212 RIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQ 271
Query: 436 VKVIMATNRADTLDPCVAKTWPSRQKNRV 350
K+IMATNR DTLDP + + P R ++
Sbjct: 272 TKIIMATNRPDTLDPALLR--PGRLDRKI 298
Score = 42.3 bits (95), Expect = 8e-05
Identities = 16/26 (61%), Positives = 23/26 (88%)
Frame = -2
Query: 807 ELPLTHVELYRQIGIEPPRGVLMYGP 730
ELPL + EL+ ++GI+PP+GVL+YGP
Sbjct: 149 ELPLKNPELFLRVGIKPPKGVLLYGP 174
Score = 42.3 bits (95), Expect = 8e-05
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQP 573
PG GKT+LA+AVA F++VV S V KY+GE F + +P
Sbjct: 175 PGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEP 226
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -2
Query: 393 PALLRPGRLDRKIEFPLPD 337
PALLRPGRLDRKIE PLP+
Sbjct: 286 PALLRPGRLDRKIEIPLPN 304
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 302 LPKMNLSDEVDLEEFVARPDRVSGADINAICQEAGMHAVQGKQIY 168
L K++ E+D E V D +GAD+ + EAG A++ + Y
Sbjct: 316 LEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDY 360
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 79.4 bits (187), Expect = 6e-16
Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = -1
Query: 625 KGPRMVRDVFRLAKENSPXXXXXXXXXXXATKRFDAQTGA-DREVQRILLGLLNQMDGFD 449
+G RMVR++F +A+E++P + R D+ G+ D EVQR +L LLNQ+DGF+
Sbjct: 222 EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFE 281
Query: 448 QTTNVKVIMATNRADTLDPCVAK 380
T N+KVIMATNR D LDP + +
Sbjct: 282 ATKNIKVIMATNRIDILDPALLR 304
Score = 63.3 bits (147), Expect = 4e-11
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQPS 570
PG GKT+LA+AVAHHT FIRV GSE VQKY+GEG+ F + PS
Sbjct: 188 PGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 240
Score = 39.5 bits (88), Expect = 6e-04
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = -2
Query: 807 ELPLTHVELYRQIGIEPPRGVLMYGP 730
ELP+ H EL+ +GI P+G+L+YGP
Sbjct: 162 ELPVKHPELFESLGIPQPKGILLYGP 187
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2
Query: 393 PALLRPGRLDRKIEFPLP 340
PALLRPGR+DRKIEFP P
Sbjct: 300 PALLRPGRIDRKIEFPPP 317
Score = 37.9 bits (84), Expect = 0.002
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = -3
Query: 293 MNLSDEVDLEEFVARPDRVSGADINAICQEAGMHAVQGKQIY 168
MNL+ +DL+ + + SGA++ +C EAGM A++ ++++
Sbjct: 333 MNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVH 374
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 69.3 bits (162), Expect = 6e-13
Identities = 36/92 (39%), Positives = 50/92 (54%)
Frame = -1
Query: 625 KGPRMVRDVFRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLGLLNQMDGFDQ 446
+G RMVR++F +A+ RFD G D EVQR +L L+ Q+DGFD
Sbjct: 256 EGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDP 315
Query: 445 TTNVKVIMATNRADTLDPCVAKTWPSRQKNRV 350
N+KV+ ATNR +TLD + + P R +V
Sbjct: 316 RGNIKVLFATNRPNTLDEALMR--PGRIDRKV 345
Score = 57.2 bits (132), Expect = 3e-09
Identities = 25/36 (69%), Positives = 30/36 (83%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEG 621
PG GKT+ A+AVA+ T A FIRV+GSE VQKY+GEG
Sbjct: 222 PGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEG 257
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/26 (50%), Positives = 21/26 (80%)
Frame = -2
Query: 807 ELPLTHVELYRQIGIEPPRGVLMYGP 730
ELPL E + ++GI+PP+G+++YGP
Sbjct: 196 ELPLLSPERFVKLGIDPPKGIMLYGP 221
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = -2
Query: 390 ALLRPGRLDRKIEFPLPD 337
AL+RPGR+DRK+EF LPD
Sbjct: 334 ALMRPGRIDRKVEFGLPD 351
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = -3
Query: 263 EFVAR--PDRVSGADINAICQEAGMHAVQGKQ 174
E +AR P + +GA++ ++C EAGM A++ ++
Sbjct: 375 ELIARLCPSQ-TGAELRSVCTEAGMFAIRARR 405
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 50.8 bits (116), Expect = 2e-07
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = -1
Query: 622 GPRMVRDVFRLAKENSPXXXXXXXXXXXATKRF-DAQTGADREVQRILLGLLNQMDGFDQ 446
GP VRD+F A++N+P R Q G++ E + L LL +MDGF
Sbjct: 373 GPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTLNQLLVEMDGFTS 432
Query: 445 TTNVKVIMATNRADTLDPCVAKTWPSRQKNRVSTSR 338
+ ++ V TNR D LDP + + P R +++ R
Sbjct: 433 SEHIVVFAGTNRPDVLDPALLR--PGRFDRQITIDR 466
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQP 573
PG GKT+LAKA A F+ V GSEF++ ++G G F + ++ P
Sbjct: 338 PGTGKTLLAKATAGEANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAP 389
Score = 32.3 bits (70), Expect = 0.084
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -2
Query: 393 PALLRPGRLDRKIEFPLPDRRQKRLIF 313
PALLRPGR DR+I PD + IF
Sbjct: 450 PALLRPGRFDRQITIDRPDIGGREQIF 476
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 49.6 bits (113), Expect = 5e-07
Identities = 27/79 (34%), Positives = 39/79 (49%)
Frame = -1
Query: 616 RMVRDVFRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLGLLNQMDGFDQTTN 437
R VR VF+ A++ SP R G D R++ LLN++DG + N
Sbjct: 628 RAVRQVFQKARQASPSVIFFDEIDALTANR-----GEDNSSDRVVAALLNELDGIEALRN 682
Query: 436 VKVIMATNRADTLDPCVAK 380
V V+ ATNR D +DP + +
Sbjct: 683 VLVLAATNRPDMIDPALMR 701
Score = 41.9 bits (94), Expect = 1e-04
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = -2
Query: 807 ELPLTHVELYRQIGIEPPRGVLMYGP 730
E PLTH E + ++G+ PP+GVL+YGP
Sbjct: 565 EWPLTHGETFSRLGVRPPKGVLLYGP 590
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQPS 570
PGC KT+ AKA+A T FI V G E K++GE F ++ PS
Sbjct: 591 PGCSKTITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPS 643
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQPS 570
PG GKTM+ +AVA A + G V KYLGE F + QPS
Sbjct: 322 PGTGKTMVMRAVAAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPS 374
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -2
Query: 807 ELPLTHVELYRQIGIEPPRGVLMYGP 730
ELP + EL++ I PPRGVL+YGP
Sbjct: 296 ELPFQNPELFKFFNIMPPRGVLLYGP 321
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = -3
Query: 296 KMNLSDEVDLEEFVARPDRVSGADINAICQEAGMHAV 186
KM +++VDL+ + + SGA++ A+CQEAG+ A+
Sbjct: 729 KMKFAEDVDLDLIAEKTEGCSGAEVVALCQEAGLIAM 765
Score = 29.9 bits (64), Expect = 0.45
Identities = 23/87 (26%), Positives = 39/87 (44%)
Frame = -1
Query: 610 VRDVFRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLGLLNQMDGFDQTTNVK 431
+R +F A+ + P A KR + + A+ R + LL +DG V
Sbjct: 361 LRKIFEDARAHQPSIIFIDEIDALAPKRTEDVSEAE---SRAVATLLTLLDGMANAGKVV 417
Query: 430 VIMATNRADTLDPCVAKTWPSRQKNRV 350
VI ATNR +++D + + P R + +
Sbjct: 418 VIAATNRPNSIDEALRR--PGRLEKEI 442
Score = 29.1 bits (62), Expect = 0.78
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -2
Query: 390 ALLRPGRLDRKIEFPLPDR 334
AL RPGRL+++IE +PD+
Sbjct: 431 ALRRPGRLEKEIEIGIPDK 449
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 393 PALLRPGRLDRKIEFPLPDRRQKRLI 316
PAL+RPGRLDR + P+ ++ I
Sbjct: 697 PALMRPGRLDRLLYVGPPNFEARKQI 722
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 49.2 bits (112), Expect = 7e-07
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 624
PGCGKT+LAKAVA+ + A FI + G E + KY+GE
Sbjct: 535 PGCGKTLLAKAVANESKANFISIRGPELLNKYVGE 569
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/79 (32%), Positives = 39/79 (49%)
Frame = -1
Query: 616 RMVRDVFRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLGLLNQMDGFDQTTN 437
R VR VF A+ +SP +R D+ + A R++ LL ++DG +
Sbjct: 572 RAVRQVFLRARASSPCVIFFDELDAMVPRRDDSLSEAS---SRVVNTLLTELDGLSDRSG 628
Query: 436 VKVIMATNRADTLDPCVAK 380
V VI ATNR D +DP + +
Sbjct: 629 VYVIAATNRPDIIDPAMLR 647
Score = 39.5 bits (88), Expect = 6e-04
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = -2
Query: 804 LPLTHVELYRQIGIEPPRGVLMYGP 730
+P+ H E+Y+ GI PPRGVL++GP
Sbjct: 192 MPIKHPEVYQYTGIHPPRGVLLHGP 216
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -2
Query: 393 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTQ 295
PA+LRPGRLD+ + LPD ++ I T+T Q
Sbjct: 643 PAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQ 675
Score = 34.7 bits (76), Expect = 0.016
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 624
PGCGKTMLA A+A+ FI + V GE
Sbjct: 217 PGCGKTMLANALANELGVPFISISAPSIVSGMSGE 251
Score = 33.1 bits (72), Expect = 0.048
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 801 PLTHVELYRQIGIEPPRGVLMYGP 730
P+ ELY+ +GI P GVL++GP
Sbjct: 511 PIKRPELYQSVGISAPTGVLLWGP 534
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 47.6 bits (108), Expect = 2e-06
Identities = 18/26 (69%), Positives = 23/26 (88%)
Frame = -2
Query: 807 ELPLTHVELYRQIGIEPPRGVLMYGP 730
ELPL H +L++ IGI+PPRG+LMYGP
Sbjct: 241 ELPLRHPQLFKSIGIKPPRGILMYGP 266
Score = 41.5 bits (93), Expect = 1e-04
Identities = 27/77 (35%), Positives = 37/77 (48%)
Frame = -1
Query: 610 VRDVFRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLGLLNQMDGFDQTTNVK 431
VRD+F A+ +P A R A G R++ LL +MDG + NV
Sbjct: 579 VRDIFDKARAAAPCVVFLDELDSIAKAR-GASAGDSGGGDRVVNQLLTEMDGVNSKKNVF 637
Query: 430 VIMATNRADTLDPCVAK 380
VI ATNR D +DP + +
Sbjct: 638 VIGATNRPDQIDPALMR 654
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 624
PG GKT+LAKA+A+ +A FI V G E + + GE
Sbjct: 540 PGTGKTLLAKAIANECSANFISVKGPELLSMWFGE 574
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQPS 570
PG GKT++A+AVA+ T A F + G E + K GE F ++ P+
Sbjct: 267 PGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPA 319
Score = 40.3 bits (90), Expect = 3e-04
Identities = 26/77 (33%), Positives = 41/77 (53%)
Frame = -1
Query: 610 VRDVFRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLGLLNQMDGFDQTTNVK 431
+R F A++NSP A KR +T + E +R++ LL MDG +NV
Sbjct: 306 LRKAFEEAEKNSPAIIFIDEIDSIAPKR--EKTNGEVE-RRVVSQLLTLMDGMKARSNVV 362
Query: 430 VIMATNRADTLDPCVAK 380
V+ ATNR +++DP + +
Sbjct: 363 VMAATNRPNSIDPALRR 379
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -3
Query: 293 MNLSDEVDLEEFVARPDRVSGADINAICQEAGMHAVQGK 177
M L+D+VDLE+ A G+D+ ++C EA M ++ K
Sbjct: 408 MKLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQIREK 446
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -2
Query: 393 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTQ 295
PAL+RPGRLD+ I PLPD + FS + TQ
Sbjct: 650 PALMRPGRLDQLIYVPLPDEEAR---FSILQTQ 679
Score = 29.9 bits (64), Expect = 0.45
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 807 ELPLTHVELYRQIGIEPPRGVLMYGP 730
++P+ + E + + G+ P +GVL +GP
Sbjct: 514 QMPVMYAEKFLRFGVTPSKGVLFFGP 539
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 393 PALLRPGRLDRKIEFPLPD 337
PAL R GR DR+++ +PD
Sbjct: 375 PALRRFGRFDREVDVGIPD 393
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQPS 570
PG GKTMLA+AVA F + GS+F + Y+G G F + +++ PS
Sbjct: 309 PGTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPS 361
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = -2
Query: 393 PALLRPGRLDRKIEFPLPDRRQKRLI 316
PAL RPGR DR I PLPD R + I
Sbjct: 421 PALTRPGRFDRHIHVPLPDVRGRLAI 446
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 42.7 bits (96), Expect = 6e-05
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQPS 570
PGCGKTMLAKA+A + A FI V K+ GE F ++ +P+
Sbjct: 134 PGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPT 186
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQPS 570
PG GKTMLA+AVA + + F + S K+LGE F ++ PS
Sbjct: 501 PGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPS 553
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQRE 579
PG GKTMLA+AVA A F + S KYLG+ F +R+
Sbjct: 421 PGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQ 470
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 278 EVDLEEFVARPDRVSGADINAICQEAGM 195
E DLEE V + SG+DI A+ ++A M
Sbjct: 577 EEDLEELVNLTEGYSGSDITALAKDAAM 604
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQP 573
PG GKT+LAKAVA + F+ + G E + Y+GE F + P
Sbjct: 697 PGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSP 748
Score = 34.7 bits (76), Expect = 0.016
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = -1
Query: 610 VRDVFRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLGLLNQMDGFDQTTN-- 437
VR+VF A+ +SP A R ++ + + R++ LL ++D + N
Sbjct: 736 VRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSGN-VMDRVVSQLLAELDSISKDNNKY 794
Query: 436 VKVIMATNRADTLDPCVAK 380
V VI ATNR D LDP + +
Sbjct: 795 VFVIGATNRPDLLDPSLLR 813
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = -2
Query: 807 ELPLTHVELYRQIGIEPPRGVLMYGP 730
+LPL EL+ Q G++P GVL+YGP
Sbjct: 672 QLPLQFPELFSQ-GLKPRSGVLLYGP 696
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 287 LSDEVDLEEFVAR-PDRVSGADINAICQEAGMHAVQGK 177
L + +DL E +GAD+ A+C +A + A++ K
Sbjct: 845 LDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIKRK 882
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQP 573
PGCGKT LA A++ FI + G E + KY+G+ F Q +P
Sbjct: 649 PGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKP 700
Score = 38.7 bits (86), Expect = 0.001
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = -1
Query: 625 KGPRMVRDVFRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLGLLNQMDGFDQ 446
K + VRD+F A+ P A +R TG R++ +L QMDG +
Sbjct: 683 KSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTGV---TDRVVNQILTQMDGAES 739
Query: 445 TTNVKVIMATNRADTLDPCVAK 380
V ++ AT R D +DP + +
Sbjct: 740 LDGVYIVAATTRPDMIDPALLR 761
Score = 30.7 bits (66), Expect = 0.26
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -2
Query: 393 PALLRPGRLDRKIEFPLPDRRQK 325
PALLRPGRLD+ I LP+ ++
Sbjct: 757 PALLRPGRLDKLIFCDLPNEEER 779
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 39.9 bits (89), Expect = 4e-04
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = -2
Query: 393 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTQDEP 286
PAL RPGR DR+ FPLPDR ++ I T +P
Sbjct: 422 PALRRPGRFDREFYFPLPDRDARKKIIEIHTRNWDP 457
Score = 35.1 bits (77), Expect = 0.012
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = -2
Query: 804 LPLTHVELYRQIGIEPPRGVLMYGP 730
LPL + E++++ ++PPRGVL +GP
Sbjct: 284 LPLLYPEIFQRFNMQPPRGVLFHGP 308
Score = 32.7 bits (71), Expect = 0.063
Identities = 24/79 (30%), Positives = 32/79 (40%)
Frame = -1
Query: 616 RMVRDVFRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLGLLNQMDGFDQTTN 437
R +R +F AK P A R Q + LL L MDG +
Sbjct: 351 RQLRLLFEEAKSTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLAL---MDGMESRGQ 407
Query: 436 VKVIMATNRADTLDPCVAK 380
V +I ATNR D +DP + +
Sbjct: 408 VIIIGATNRPDAVDPALRR 426
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = -3
Query: 728 PGCGKTMLAKAVA-----HHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQPS 570
PG GKT++A+A+A + +F G++ + K++GE F + QPS
Sbjct: 309 PGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPS 366
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 39.5 bits (88), Expect = 6e-04
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQPS 570
PG GK+ LAKAVA + F + S+ V K++GE F + ++PS
Sbjct: 171 PGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPS 223
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 34.7 bits (76), Expect = 0.016
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 514 TGADREV-QRILLGLLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 380
+G D V +++ LL +MDG DQ N+ VI TNR D +D + +
Sbjct: 391 SGGDTGVGDQVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLR 436
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTAAFIRVV-GSEFVQKYLGEGTPYGAGRFPSCQRE 579
PG GKT++A+ + A ++V G E + KY+G+ F +RE
Sbjct: 313 PGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLFADAERE 363
Score = 29.1 bits (62), Expect = 0.78
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 390 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTQ 295
ALLRPGRL+ +E LPD + I T++
Sbjct: 433 ALLRPGRLEVHMEISLPDEHGRLQILKIHTSR 464
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 34.7 bits (76), Expect = 0.016
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = -2
Query: 393 PALLRPGRLDRKIEFPLPDRRQKRLI 316
PAL RPGR DR+ FPLP+++ + I
Sbjct: 528 PALRRPGRFDREFYFPLPNKQARMKI 553
Score = 33.1 bits (72), Expect = 0.048
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 804 LPLTHVELYRQIGIEPPRGVLMYGP 730
LPL + E++ + I PPRGVL +GP
Sbjct: 390 LPLLYPEVFLHLHITPPRGVLFHGP 414
Score = 31.9 bits (69), Expect = 0.11
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -1
Query: 487 ILLGLLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 380
I+ LL MDG D V VI ATNR + LDP + +
Sbjct: 497 IVSTLLALMDGLDTRGQVVVIGATNRPNDLDPALRR 532
Score = 29.5 bits (63), Expect = 0.59
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = -3
Query: 728 PGCGKTMLAKAVAHHTTA-----AFIRVVGSEFVQKYLGEGTPYGAGRFPSCQREQPS 570
PG GKT++A+ +A + + +F GS+ + K++GE F +R QPS
Sbjct: 415 PGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPS 472
Score = 29.1 bits (62), Expect = 0.78
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 233 GADINAICQEAGMHAVQG--KQIYCPS*RFRKGLQE 132
GAD+ A+C EA ++AV+ QIY S +F L E
Sbjct: 582 GADLKALCTEAALNAVRRTFPQIYTSSDKFLIDLNE 617
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 29.9 bits (64), Expect = 0.45
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 478 GLLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 380
GLLN +DG + + M TN + LDP + +
Sbjct: 326 GLLNALDGVTSSDERIIFMTTNHPEKLDPALVR 358
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -2
Query: 108 NMNFINKRHFSVDCVLICLQLE 43
N++F+N+ SVD V+IC+ ++
Sbjct: 552 NLSFVNETTVSVDKVVICIPMD 573
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +1
Query: 127 CYSCNPFRNL*EGQYICFPXTACMPAS*QMALMSAPDTRSGRATNSSKSTSSERFI 294
C CN Q +CF + CM + +S ++ +T+ S+ S E F+
Sbjct: 83 CICCNSVLRY-PAQAMCFRCSLCMTVNDVYFCLSGSQIKTKASTDGSQFISVEHFV 137
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 283 RMKWIWKSSWLDRTACPAPTSTPSVRRPACTLXRENRYI 167
R + W S +++ + A S RR C L R NR I
Sbjct: 195 RFRPSWDSYFMEMASLAAKRSNCMKRRVGCVLVRGNRVI 233
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -1
Query: 232 APTSTPSVRRPACTLXRENRYIVLPKDFEKGYKNNI 125
APT S R P + + ++VLP +N++
Sbjct: 496 APTPDTSFREPLSEIGSNDSWLVLPNSLSANIQNDV 531
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,564
Number of Sequences: 5004
Number of extensions: 64554
Number of successful extensions: 296
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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