Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L07
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF166168-1|AAD49857.1|  679|Caenorhabditis elegans adducin-relat...    38   0.011
AF166167-1|AAD49856.1|  732|Caenorhabditis elegans adducin-relat...    38   0.011
AF039043-6|AAP82653.1|  718|Caenorhabditis elegans Adducin prote...    38   0.011
AF039043-5|AAK70639.1|  732|Caenorhabditis elegans Adducin prote...    38   0.011
AF039043-4|AAL32219.1|  702|Caenorhabditis elegans Adducin prote...    38   0.011
AF039043-3|AAM54181.1|  682|Caenorhabditis elegans Adducin prote...    38   0.011
AF039043-2|AAK70638.1|  679|Caenorhabditis elegans Adducin prote...    38   0.011
Z81562-6|CAB04554.1|  211|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AF016441-3|AAB65909.2|  744|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF077532-1|AAC26268.1|  301|Caenorhabditis elegans Hypothetical ...    28   6.7  
U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule abnor...    28   8.9  
U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule abnor...    28   8.9  
AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.      28   8.9  

>AF166168-1|AAD49857.1|  679|Caenorhabditis elegans adducin-related
           protein protein.
          Length = 679

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 726 TGDHVVLMGAASKGIIQRGYQHNAXRVQRALRPEP 622
           T D  +L+G ASKGII R +QH+A    +   P P
Sbjct: 536 TADRAILIGTASKGIIDRQFQHHAQVYHQIYAPNP 570


>AF166167-1|AAD49856.1|  732|Caenorhabditis elegans adducin-related
           protein protein.
          Length = 732

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 726 TGDHVVLMGAASKGIIQRGYQHNAXRVQRALRPEP 622
           T D  +L+G ASKGII R +QH+A    +   P P
Sbjct: 536 TADRAILIGTASKGIIDRQFQHHAQVYHQIYAPNP 570


>AF039043-6|AAP82653.1|  718|Caenorhabditis elegans Adducin protein
           1, isoform e protein.
          Length = 718

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 726 TGDHVVLMGAASKGIIQRGYQHNAXRVQRALRPEP 622
           T D  +L+G ASKGII R +QH+A    +   P P
Sbjct: 536 TADRAILIGTASKGIIDRQFQHHAQVYHQIYAPNP 570


>AF039043-5|AAK70639.1|  732|Caenorhabditis elegans Adducin protein
           1, isoform b protein.
          Length = 732

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 726 TGDHVVLMGAASKGIIQRGYQHNAXRVQRALRPEP 622
           T D  +L+G ASKGII R +QH+A    +   P P
Sbjct: 536 TADRAILIGTASKGIIDRQFQHHAQVYHQIYAPNP 570


>AF039043-4|AAL32219.1|  702|Caenorhabditis elegans Adducin protein
           1, isoform c protein.
          Length = 702

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 726 TGDHVVLMGAASKGIIQRGYQHNAXRVQRALRPEP 622
           T D  +L+G ASKGII R +QH+A    +   P P
Sbjct: 536 TADRAILIGTASKGIIDRQFQHHAQVYHQIYAPNP 570


>AF039043-3|AAM54181.1|  682|Caenorhabditis elegans Adducin protein
           1, isoform d protein.
          Length = 682

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 726 TGDHVVLMGAASKGIIQRGYQHNAXRVQRALRPEP 622
           T D  +L+G ASKGII R +QH+A    +   P P
Sbjct: 536 TADRAILIGTASKGIIDRQFQHHAQVYHQIYAPNP 570


>AF039043-2|AAK70638.1|  679|Caenorhabditis elegans Adducin protein
           1, isoform a protein.
          Length = 679

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 726 TGDHVVLMGAASKGIIQRGYQHNAXRVQRALRPEP 622
           T D  +L+G ASKGII R +QH+A    +   P P
Sbjct: 536 TADRAILIGTASKGIIDRQFQHHAQVYHQIYAPNP 570


>Z81562-6|CAB04554.1|  211|Caenorhabditis elegans Hypothetical
           protein K03D7.9 protein.
          Length = 211

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 391 PLLVGFGPALAWSLFSKLGVRRATPLLSRTGRWPVTSS 504
           P+  GF P L W L     V+R   L     +W VT S
Sbjct: 20  PISSGFSPGLVWFLSGTAAVQRFVILYISKYKWLVTGS 57


>AF016441-3|AAB65909.2|  744|Caenorhabditis elegans Hypothetical
           protein M03F8.3 protein.
          Length = 744

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 598 EIDEYRRDVERKRRGNEYDTDLSESEAISAAQ 503
           E +E  +D E K R  + DTDLSES + S ++
Sbjct: 694 EKEEAGKDAEEKVREGDSDTDLSESSSSSDSE 725


>AF077532-1|AAC26268.1|  301|Caenorhabditis elegans Hypothetical
           protein F40B1.1 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 403 QPEVVLSDVDTTDFLN-AERAHVDSTRGDHTVNGDHSDAHQSTFS 272
           Q EV L D+D TDF N  E  + +    D T++G    AH    S
Sbjct: 190 QKEVTLQDIDPTDFQNLLEVLYGEPAIDDETIDGILHLAHMYDMS 234


>U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule
           abnormality protein 1,isoform a protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = -3

Query: 340 VDSTRGDHTVNGDH--SDAHQSTFSHSSKEGSPSKEASTEDSPXXXXXXXKGLRTPSFLX 167
           V+  +   TVN     SDA+Q T S +S E +PS      DSP        G++    + 
Sbjct: 551 VNDAQQQQTVNEIEMASDANQDTSSSASPEVAPSFSTDGWDSPTKSVALPPGMQQ---ID 607

Query: 166 XXXXXXXXKSSTPQP 122
                   K STPQP
Sbjct: 608 EEETTVADKDSTPQP 622


>U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule
           abnormality protein 1,isoform b protein.
          Length = 771

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = -3

Query: 340 VDSTRGDHTVNGDH--SDAHQSTFSHSSKEGSPSKEASTEDSPXXXXXXXKGLRTPSFLX 167
           V+  +   TVN     SDA+Q T S +S E +PS      DSP        G++    + 
Sbjct: 592 VNDAQQQQTVNEIEMASDANQDTSSSASPEVAPSFSTDGWDSPTKSVALPPGMQQ---ID 648

Query: 166 XXXXXXXXKSSTPQP 122
                   K STPQP
Sbjct: 649 EEETTVADKDSTPQP 663


>AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = -3

Query: 340 VDSTRGDHTVNGDH--SDAHQSTFSHSSKEGSPSKEASTEDSPXXXXXXXKGLRTPSFLX 167
           V+  +   TVN     SDA+Q T S +S E +PS      DSP        G++    + 
Sbjct: 551 VNDAQQQQTVNEIEMASDANQDTSSSASPEVAPSFSTDGWDSPTKSVALPPGMQQ---ID 607

Query: 166 XXXXXXXXKSSTPQP 122
                   K STPQP
Sbjct: 608 EEETTVADKDSTPQP 622


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,683
Number of Sequences: 27780
Number of extensions: 211930
Number of successful extensions: 640
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)