Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L06
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...   170   2e-43
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     31   0.21 
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    27   2.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   8.1  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
            Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score =  170 bits (414), Expect = 2e-43
 Identities = 100/214 (46%), Positives = 129/214 (60%), Gaps = 2/214 (0%)
 Frame = -1

Query: 752  PFAXALXSXSNPQXSVXDVXNKYSHDSDNDVATTPYSPWTRGRRH*QRKTGDDAACAGAV 573
            P A  L S SNPQ  + D  ++YSHD+D DVA      +  G           A     +
Sbjct: 672  PLALGLLSASNPQMRIFDTLSRYSHDNDLDVAYNAI--FAMGLVGAGTSNARLAQLLRQL 729

Query: 572  PTASLRCTCSWCGWR--QGLCHAGKGTVTLCPAHADRRLLNQPALAGLLVVLTAFLDCKT 399
             +   + + +    R  QGL + GKGT+TL P H +R++L Q A AGL+ V+ A LD  T
Sbjct: 730  ASYYHKESNALFMVRIAQGLLYLGKGTMTLNPYHTERQILGQTAFAGLMTVVLAMLDANT 789

Query: 398  IILGKSHYLLYVLATAMQPRWLVTLDENLQPLNVSVRVGQAVDVIGKAGTPKTIAGSHTH 219
             +L  SH+LLY +  A++PR L+TL E+ Q L VSVRVGQAVDV+G+AG PK I G  TH
Sbjct: 790  FVLDTSHWLLYAITLAIRPRMLITLGEDGQYLPVSVRVGQAVDVVGQAGRPKVITGWVTH 849

Query: 218  TTPVLLSFGERAELAADEYIPLSPIMEGFVILKK 117
            TTPVLL   ERAELA + Y PL+  +EG VILKK
Sbjct: 850  TTPVLLHHNERAELATEAYTPLTS-LEGIVILKK 882


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 380 HYLLYVLATAMQPRWLVTLDENLQPLN 300
           H++LYV +  +QP WL   D N+ P N
Sbjct: 333 HFVLYVPSPQIQPLWLENEDSNIIPTN 359


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 243 LRCTGFSDNIHSLSHTHADVQGLKIFVEGDQPAGLHRSRQYVQQVVGFAEDYGLAVEE 416
           +R    +DN+  L     +V+ + + + G  PAGL  + +  QQ      D  + V E
Sbjct: 69  VRLNELTDNLRKLDTIEREVEDVDVCIVGAGPAGLSAAIRIKQQAAKANRDIRVVVLE 126


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -1

Query: 338 WLVTLDENLQPLNVSVRVGQAVDVIGKAGTPKTIAGSHTH 219
           W  T+  ++QP   +V + Q+++ +      K +A  H H
Sbjct: 180 WHPTISSHIQPETATVFIEQSLNFLEGPKLTKALAAQHLH 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,221
Number of Sequences: 5004
Number of extensions: 57932
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)