Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L06
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...   180   1e-45
U53340-4|AAA96209.2|  445|Caenorhabditis elegans Hypothetical pr...    31   0.81 
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    31   1.1  
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    31   1.1  
U41021-7|AAL02487.1|  680|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U41021-6|AAL02488.1|  713|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ...    29   4.3  
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ...    29   4.3  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   4.3  
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ...    29   4.3  
L15201-1|AAA27946.2|  273|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF099915-9|AAC68774.1|  108|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
            regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score =  180 bits (438), Expect = 1e-45
 Identities = 108/221 (48%), Positives = 135/221 (61%), Gaps = 9/221 (4%)
 Frame = -1

Query: 752  PFAXALXSXSNPQXSVXDVXNKYSHDSDNDVATTPYSPWTRGRRH*QRKTGDDAACAGAV 573
            P A +L S SNPQ ++ +  +K+SHDSD D A      +  G            A    +
Sbjct: 750  PLALSLLSVSNPQLNILETLSKFSHDSDADTAHNAI--FAMGLVGAGTNNARLVAMLRNL 807

Query: 572  PTASLRCTCSWCGWR--QGLCHAGKGTVTLCPAHADRRLLNQPALAGLLVVLTAFLDCK- 402
             +   +   S    R  QGL H GKGT+TL P H+DR+LL+  ALA LL +  +FLD   
Sbjct: 808  ASYHYKDQVSLMLVRIAQGLTHLGKGTMTLNPWHSDRQLLSPSALASLLSICFSFLDANN 867

Query: 401  TIILGKSHYLLYVLATAMQPRWLVTLDEN------LQPLNVSVRVGQAVDVIGKAGTPKT 240
            TI+  + HYLLY L  AMQPR L TL E+      L+ LNVSVRVGQAVDV+ +AG PKT
Sbjct: 868  TILNNRQHYLLYTLVLAMQPRMLTTLVEDEMKPGSLKQLNVSVRVGQAVDVVAQAGKPKT 927

Query: 239  IAGSHTHTTPVLLSFGERAELAADEYIPLSPIMEGFVILKK 117
            I G  THTTPVLL+ GERAELA DEY+ ++P +EG VILKK
Sbjct: 928  ITGFQTHTTPVLLAHGERAELANDEYLSVTPHLEGLVILKK 968


>U53340-4|AAA96209.2|  445|Caenorhabditis elegans Hypothetical
           protein F02E8.2a protein.
          Length = 445

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
 Frame = -1

Query: 557 RCTCSWCGWRQGLCHAGKGTVTLCPAHADRRLLNQPALAGLLVVLTAFLDCKTIILGKSH 378
           R +  +CG+ + + + G+  +   P    R           ++ L   + C   ILG  H
Sbjct: 217 RVSQDFCGFNRQMTYIGRCDLVTSPDSFFRYPFESAITITFVLPLFFIIYCYFRILGTRH 276

Query: 377 YLLYVLATAMQPR-WLVTLDENLQPLNVSVRVGQAVDVIGKAGTPKTIAGSHTHTTPV 207
           +L   +  +     + VTL+E     +V   VG A    G    P T   S+T + P+
Sbjct: 277 FLCITVNLSYTSNIFPVTLNEMSNSTHVHTPVGTARSDSGAFPFPHTSNNSNTQSFPL 334


>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 249 CTGFSDNIHSLSHTHADVQGLKIFVEGDQPAG 344
           CT   D +HS+SHT++D++  K+ ++ +   G
Sbjct: 413 CTTIRDLVHSVSHTYSDLENNKLKLDDESRLG 444


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 249 CTGFSDNIHSLSHTHADVQGLKIFVEGDQPAG 344
           CT   D +HS+SHT++D++  K+ ++ +   G
Sbjct: 413 CTTIRDLVHSVSHTYSDLENNKLKLDDESRLG 444


>U41021-7|AAL02487.1|  680|Caenorhabditis elegans Hypothetical
           protein F14D12.1a protein.
          Length = 680

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 490 RVTVPLPA*HSPWRQPHHEQVHRRLAVGTAPA 585
           R T PLP    P R  HHE +HR+ +  T PA
Sbjct: 247 RPTPPLP--EEPSRTNHHEVIHRKASTMTTPA 276


>U41021-6|AAL02488.1|  713|Caenorhabditis elegans Hypothetical
           protein F14D12.1b protein.
          Length = 713

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 490 RVTVPLPA*HSPWRQPHHEQVHRRLAVGTAPA 585
           R T PLP    P R  HHE +HR+ +  T PA
Sbjct: 247 RPTPPLP--EEPSRTNHHEVIHRKASTMTTPA 276


>Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical
           protein F26H11.4 protein.
          Length = 739

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 134 IPPLSARVVCTRQPPVLLARRRTAAPASC 220
           IPP++A + C   PP L  R++   P  C
Sbjct: 177 IPPVAASLPCPPPPPPLSERKKNVGPKPC 205


>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
           protein ZK250.9 protein.
          Length = 1466

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -1

Query: 638 WTRGRRH*QRKTGDDAACAGAVPTASLRCTCSWCGWR--QGLCHAGKGTVTLC 486
           W + +R+   KT D ++ A      S+RC C  C  R  QG   +    + +C
Sbjct: 106 WMKKKRNEVAKTHDTSSVANPNYLGSMRCVCKNCNARFFQGEVSSSNDHINMC 158


>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
           protein Y16E11A.2 protein.
          Length = 1466

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -1

Query: 638 WTRGRRH*QRKTGDDAACAGAVPTASLRCTCSWCGWR--QGLCHAGKGTVTLC 486
           W + +R+   KT D ++ A      S+RC C  C  R  QG   +    + +C
Sbjct: 106 WMKKKRNEVAKTHDTSSVANPNYLGSMRCVCKNCNARFFQGEVSSSNDHINMC 158


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -1

Query: 638 WTRGRRH*QRKTGDDAACAGAVPTASLRCTCSWCGWR--QGLCHAGKGTVTLC 486
           W + +R+   KT D ++ A      S+RC C  C  R  QG   +    + +C
Sbjct: 16  WMKKKRNEVAKTHDTSSVANPNYLGSMRCVCKNCNARFFQGEVSSSNDHINMC 68


>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
           protein F59H6.5 protein.
          Length = 1486

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -1

Query: 638 WTRGRRH*QRKTGDDAACAGAVPTASLRCTCSWCGWR--QGLCHAGKGTVTLC 486
           W + +R+   KT D ++ A      S+RC C  C  R  QG   +    + +C
Sbjct: 106 WMKKKRNEVAKTHDTSSVANPNYLGSMRCVCKNCNARFFQGEVSSSNDHINMC 158


>L15201-1|AAA27946.2|  273|Caenorhabditis elegans Hypothetical
           protein C08C3.2 protein.
          Length = 273

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 117 FLENHESLHYRREWYVLVSR 176
           F ++ E +HY  EW++LV R
Sbjct: 25  FFKSPEEIHYNAEWFILVIR 44


>AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical
           protein C26G2.2 protein.
          Length = 952

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +1

Query: 130 TNPSIIGESGMYSSAASSARSPKDSSTGVV*VWEPAIVFGVPAFPITSTACPTRTLT 300
           T  S+I E+   + AASS+ SP D ST +      ++V  VP    TS   P  T T
Sbjct: 482 TTTSVILETTEATDAASSSLSPDDVSTQLTTEATTSVVSSVPPDSSTSKG-PLETTT 537


>AF099915-9|AAC68774.1|  108|Caenorhabditis elegans Hypothetical
           protein E02H9.9 protein.
          Length = 108

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 358 RLRCNPAGWSPST---KIFSP*TSACVWDRLWMLSEKP 254
           R+RC  +G+ PST   +IFS      + +  WM+S +P
Sbjct: 3   RIRCELSGFGPSTFFSEIFSKEVDDKIGETDWMVSRRP 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,319,321
Number of Sequences: 27780
Number of extensions: 368700
Number of successful extensions: 1145
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)