Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L05
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    75   1e-14
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    31   0.21 
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    31   0.21 
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    26   6.1  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   6.1  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   6.1  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 36/57 (63%), Positives = 41/57 (71%)
 Frame = -2

Query: 769 GXXPAIQXLFKRXSEQFTAMFRRKLXCIGTPGEGMDEMEFPEAESNMXDLVSEYXQY 599
           G   +IQ +F+R  +QF+AMFRRK       GEGMDEMEF EAESNM DLVSEY QY
Sbjct: 369 GNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 757 AIQXLFKRXSEQFTAMFRRKLXCIGTPGEGMDEMEFPEAESNMXDLVSEYXQ 602
           +I   + R   +F  M+ ++       GEGM+E EF EA  ++  L  +Y +
Sbjct: 387 SIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 757 AIQXLFKRXSEQFTAMFRRKLXCIGTPGEGMDEMEFPEAESNMXDLVSEYXQ 602
           +I   + R   +F  M+ ++       GEGM+E EF EA  ++  L  +Y +
Sbjct: 383 SIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 423 SYYINTKSKSIVDLSKGERWKGG 491
           SY++     SI+  S G++WK G
Sbjct: 56  SYFVTRNKSSIIAFSIGKKWKPG 78


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 743 VQAHXGTVYRYVQAQAXLHWYTRRGHGRDG 654
           V A  G+V  Y+      HW++R+G+   G
Sbjct: 7   VDASSGSVGSYMSKSVRKHWWSRKGYHPTG 36


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +2

Query: 53  SKTLIDLEKKKLYDIN*L---SLEKANNSSHWLQNEELKLHL 169
           SKTL DL+K+KL + N +   SL K  N S  LQ E+L   L
Sbjct: 152 SKTLTDLKKRKLVERNKIMYFSLRKGPNFS--LQIEKLNTDL 191


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 450 FCFSYLYSNFNSFRLQHA**NNLGSTR 370
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,767
Number of Sequences: 5004
Number of extensions: 45636
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)