Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L04
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    35   0.017
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    33   0.039

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 442 KRTXXLLXWXPXAFKLGIHYQPPTYXP 362
           +RT   + W P  FK+GI Y+PP + P
Sbjct: 342 RRTIQFVDWCPTGFKIGICYEPPQHVP 368



 Score = 33.5 bits (73), Expect = 0.039
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -3

Query: 309 TXDIAEAWARVXHKXDLMYA 250
           T  IAEAW+R+ HK DLMY+
Sbjct: 385 TTSIAEAWSRLDHKFDLMYS 404


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -3

Query: 309 TXDIAEAWARVXHKXDLMYA 250
           T  IAEAW+R+ HK DLMY+
Sbjct: 381 TTSIAEAWSRLDHKFDLMYS 400



 Score = 29.1 bits (62), Expect = 0.83
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 442 KRTXXLLXWXPXAFKLGIHYQPPTY 368
           KRT   + W P  FK+GI  +PP +
Sbjct: 338 KRTIQFVDWCPTGFKIGICDRPPQH 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,484
Number of Sequences: 5004
Number of extensions: 10973
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)