Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L03
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    31   0.25 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   9.5  

>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = -3

Query: 619 PSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRST 461
           PS     FR P+    PP   SRS S +  +   RSQL   S     STS ST
Sbjct: 301 PSKPEIPFRHPTSKPLPPKPLSRSKSSSLSRNQTRSQLNDLS-AENDSTSNST 352


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 25/102 (24%), Positives = 39/102 (38%)
 Frame = -3

Query: 781  PPXPXGXIPVKVHGTXPTPCIFPNQXXPRREARPIPGRKTSALPPLKYTLXAQCPSMSRS 602
            P  P    P ++  + PTP   P    P   A P+P    SA PP      +  PS+   
Sbjct: 1691 PVRPQSAAPPQM--SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP--PLPASSAPSVPNP 1746

Query: 601  QFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQS 476
              R+    Q    T  + T  T   +P   ++   S G++ +
Sbjct: 1747 GDRSALLQQIHTGTRLKKTVTTDKSKPIAGRVLDASDGNSSA 1788


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
 Frame = -3

Query: 781 PPXPXGXIPVKVHGTXPTPCIFPNQXXPRREARP--IPGRKTSALPPLKYTLXAQCPSMS 608
           PP P    P    G  P P +  ++      A P  IPGR   ALPPL        P + 
Sbjct: 362 PPPPPRSAPST--GRQPPP-LSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP 418

Query: 607 RSQFRTPSRYQCPPLTPSRSTS 542
                 PS    P L PS   S
Sbjct: 419 TPPSLPPS--APPSLPPSAPPS 438


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
 Frame = -3

Query: 781  PPXPXGXIPVKVHGTXPTPCIFPNQXXPRREARPIPGRKTSALPPLKYTLXAQCPSMSRS 602
            PP P   + V      P P   P    P     P+P     A PP+     ++ PS+S  
Sbjct: 1198 PPVPKPSVGVP---PVPPPSTAPPVPTPSAGLPPVPVPTAKA-PPVP-APSSEAPSVSTP 1252

Query: 601  QFRTPSRY-QCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTS 470
            +   PS +    P   S S +     R   S+  S +  H  STS
Sbjct: 1253 RSSVPSPHSNASPSPTSSSMASAAPARTSVSRSKSKAERHETSTS 1297


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 525  LFYWVRDVLLDGVRGGHWYLDGVRNWLLDMDGHWAXNVYFN 647
            L Y++ D+     RG H+  D +    L MD   A N YFN
Sbjct: 1546 LIYFILDIFQ--FRGLHFAYDEIDTDQLSMDLQDALNAYFN 1584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,565
Number of Sequences: 5004
Number of extensions: 36300
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)