Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_L03
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 34 0.11
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 32 0.61
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 30 1.9
05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069 29 3.3
05_03_0039 - 7621613-7622695 29 3.3
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.3
01_01_0082 + 625198-625719 29 4.3
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 29 5.7
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 28 7.5
01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159 28 7.5
07_03_1164 + 24451808-24451868,24452690-24452923,24453735-244537... 28 9.9
07_03_1126 - 24166758-24166879,24166948-24167386,24167708-241678... 28 9.9
04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231 28 9.9
03_05_0543 - 25404630-25405408,25405461-25405605 28 9.9
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 34.3 bits (75), Expect = 0.11
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Frame = -3
Query: 655 LPPLKYTLXAQCPSMSRS---QFRTPSRYQCPPLTPSR--STSRTQ*KRPCRSQLTSPST 491
+PP T+ A P+ RS + R + PPL P + + + KRP S ++ S
Sbjct: 1 MPP---TMLASVPTRPRSHPFRRRRGAAAAAPPLLPDQIAAAAAAAAKRPAESSTSASSC 57
Query: 490 GHTQ--STSRSTCLCTLRSPYRTQLRYRYQ 407
H++ S + +TC +L + R + R RYQ
Sbjct: 58 FHSEVISATSTTCPTSLAAAQRPEKRPRYQ 87
>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 31.9 bits (69), Expect = 0.61
Identities = 21/80 (26%), Positives = 29/80 (36%)
Frame = -3
Query: 781 PPXPXGXIPVKVHGTXPTPCIFPNQXXPRREARPIPGRKTSALPPLKYTLXAQCPSMSRS 602
PP P ++VH + PN P+P T LPP+ + SM
Sbjct: 878 PPAPPSASQLQVHAPPVQGSVPPNPSIMHTPNAPMPSHNTLPLPPMHPSGNPAHSSMPLR 937
Query: 601 QFRTPSRYQCPPLTPSRSTS 542
F P PPL S++
Sbjct: 938 SFVPPLPEGPPPLRQHTSSA 957
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = -3
Query: 787 PXPPXPXGXIPVKVHGTXPTPCIFPNQXXPRREARPIPGR-KTSALPPLKYTLXAQCPSM 611
P PP P P PTP P P+ P P + + S PP +T + +
Sbjct: 171 PAPPPPQAPAPTPPQAPAPTPPRAPTPTPPQAPL-PAPSKSRASQAPPPAHTRATKKAKV 229
Query: 610 SRSQFRTPSRYQC 572
++ + P Y C
Sbjct: 230 DAAKNKDPG-YDC 241
>05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069
Length = 228
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 454 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 543
+GTC T G+ TGM TG T TG G
Sbjct: 99 SGTCKYPATASGVGTGMGTGTSTGTGTGVG 128
>05_03_0039 - 7621613-7622695
Length = 360
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -1
Query: 591 PRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 475
P+ G P P + HP P + + P HP + P P
Sbjct: 162 PKPGPKPEPKPEPKPHPEPKPEPKPKPVPHPEPKPEPKP 200
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = -1
Query: 594 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 475
VP P P + HP P + + P HP+ + P P
Sbjct: 189 VPHPEPKPEPKPEPKPHPEPKPEPKPEPKLHPKPEPKPHP 228
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -3
Query: 787 PXPPXPXGXIPVKVHGTXPTPCIFPNQXXPRREARPIPGRKTSALPP 647
P PP P +P P P I PN+ P P P S LPP
Sbjct: 590 PPPPLPNCLVPSPPPPPPPPP-ILPNRSVPPPPPPPPPLPNHSVLPP 635
>01_01_0082 + 625198-625719
Length = 173
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Frame = -3
Query: 778 PXPXGXIPVKVHGTXPTPCIFPNQXXPRREARPIPGRKTSALPPLKYTLXAQCPSMSRSQ 599
P P +P V+ P P +P P A P P ++ PP Y P+ S +
Sbjct: 53 PPPPDVLPTPVYYPPPPPVYYP-PPSPPPVAYPPPTTPSTNCPPPPYGGGGYNPTPSYNP 111
Query: 598 F----RTPSRYQCPPLTPSRST 545
TPS + PP PS T
Sbjct: 112 TPGYNPTPSGWFTPPNMPSYLT 133
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = -3
Query: 796 MXXPXPPXPXGXIPVKVHGTXPTPCIFPNQXXPRREARPIPGRKTSALP 650
M P PP P +P P P FP+ R E R K A P
Sbjct: 540 MLPPPPPPPRNMLPPPPKSMPPPPPKFPSNEMSRNEDRCADLNKPMAPP 588
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 649 PLKYTLXAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTS 470
P+K + S S + R+PSR P +P R S + K P +S+ S S + +
Sbjct: 238 PVKERSRSASQSRSPVKERSPSRSPPPATSPPREKSAS--KSPVKSRSLSRSPSPVRDIN 295
Query: 469 RSTCLCTLR 443
+ C+ L+
Sbjct: 296 QKLCIFRLQ 304
>01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159
Length = 400
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/67 (28%), Positives = 24/67 (35%)
Frame = -3
Query: 787 PXPPXPXGXIPVKVHGTXPTPCIFPNQXXPRREARPIPGRKTSALPPLKYTLXAQCPSMS 608
P P P +PV+V P P P P+ P P PP PS
Sbjct: 8 PAPDRPPPPVPVRV----PVPEPQPEPETPQASPSPPPAPD----PPTPLLFPESAPSTP 59
Query: 607 RSQFRTP 587
R ++ TP
Sbjct: 60 REEYHTP 66
>07_03_1164 +
24451808-24451868,24452690-24452923,24453735-24453768,
24454372-24454627
Length = 194
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 445 SMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 543
+M GT F+ TG G +TG G GT TG G
Sbjct: 126 TMTPGT-FTPGTGMGTTTGTGMGTGTTTGTGLG 157
>07_03_1126 -
24166758-24166879,24166948-24167386,24167708-24167875,
24168388-24168675,24169468-24169575,24169759-24169811,
24170033-24170192,24170353-24170442,24170902-24170953,
24171156-24171283
Length = 535
Score = 27.9 bits (59), Expect = 9.9
Identities = 30/118 (25%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
Frame = -3
Query: 787 PXPPXPXGXIPVKVHGTXPTPCIFPNQXXPRREARPIPGRKTSALPPLKYTLXAQCPSMS 608
P PP P P TP P P P+PG + +P T A +
Sbjct: 354 PNPPSPLRPPPHLSSPFQRTPSARPTFSLPCTAMTPLPG-PLNRIP--SNTFMASATRLF 410
Query: 607 RSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTC-LCTLRSP 437
+ T S Y + R + + C+ Q TSP + +RST T R+P
Sbjct: 411 LNNVTTISLYAVAAGSSPRLSIPFHTLQACKRQRTSPRGSILRPAARSTSRSATRRTP 468
>04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231
Length = 344
Score = 27.9 bits (59), Expect = 9.9
Identities = 24/77 (31%), Positives = 30/77 (38%)
Frame = -3
Query: 787 PXPPXPXGXIPVKVHGTXPTPCIFPNQXXPRREARPIPGRKTSALPPLKYTLXAQCPSMS 608
P PP P IP G P P + Q +P+P + LPPL Q P +
Sbjct: 75 PLPPLPTIQIP----GLPPLPQLPTIQIPGLPPLQPLPAIQIPGLPPLPQLPTIQIPGLP 130
Query: 607 RSQFRTPSRYQCPPLTP 557
Q P+ Q P L P
Sbjct: 131 TLQ-PLPT-IQIPGLPP 145
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = -3
Query: 715 PNQXXPRRE-ARPIPGRKTSALPPLKYTLXAQCP-SMSRSQFRTPSRYQCP---PLTPSR 551
P Q PRR A P+PG +T PP + A P + + SQ R P P+T R
Sbjct: 133 PPQPEPRRPPAAPLPGVRTPPSPPRRAPAPAPAPLTPALSQRFLAERRPAPVPEPVTRKR 192
Query: 550 S 548
S
Sbjct: 193 S 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,754,930
Number of Sequences: 37544
Number of extensions: 293956
Number of successful extensions: 1319
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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