Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L02
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    58   1e-09
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   1.0  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   5.4  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    26   5.4  
SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    25   9.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   9.4  
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    25   9.4  

>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = -1

Query: 715 TLTEEXCKPVGSRYDGQVAVFGREFQKKLGQLKYFIVG 602
           T++EE CKP G RYDGQ+AVFG EFQ+K+  L  F+VG
Sbjct: 397 TISEETCKPRGCRYDGQIAVFGSEFQEKIASLSTFLVG 434


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 567  NPFKSVQSPRYSPTIKYFSC--PSFFWNSLPKTATCPSYREPTGLXFSSVRVEWS 725
            +P  S  SP YSPT   +S   PS+   S   + T PSY  PT   +S     +S
Sbjct: 1589 SPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYS 1642



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 561  SINPFKSVQSPRYSPTIK-YFSCPSFFWNSLPKTATCPSYREPTGLXFSSVRVEWS 725
            +++P   + SP YSP+   Y + P++  +S   + T PSY  PT   +S     +S
Sbjct: 1546 AMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSY-SPTSPSYSPTSPSYS 1600


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 182 KPGQSRGVPAVNTTTRHAAPP--RGRPTDGSSRR*STTND 295
           KP  S+   A NTT+R   PP  R R   G++    TT+D
Sbjct: 445 KPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSRTTSD 484


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 164 DLRLGSKPGQSRGVPAVNTTT-RHAAPPRGRPTDGSSRR 277
           DL+L     +  G+P   +T+ +H  PPR RP    SR+
Sbjct: 177 DLQLTPLQRKLMGLPEGGSTSGKHLTPPRYRPNFSPSRK 215


>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 316 KVKSKTDVVGRRLSPRRPVGRA 251
           KVKS+T  V ++  P++P GRA
Sbjct: 13  KVKSQTPKVEKQEKPKQPKGRA 34


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 176 GSKPGQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STTN 292
           GSK  Q+   P  ++   + APP+ +P    S   +TT+
Sbjct: 741 GSKKKQTEIPPVSSSPPHNDAPPKAKPISAPSELPNTTS 779


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 316 KVKSKTDVVGRRLSPRRPVGRA 251
           KVKS+T  V ++  P++P GRA
Sbjct: 13  KVKSQTPKVEKQEKPKQPKGRA 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,685
Number of Sequences: 5004
Number of extensions: 70386
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)