Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_L02
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 44 1e-04
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 43 3e-04
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 43 3e-04
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 42 6e-04
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 31 1.1
09_04_0378 - 17091407-17092369 31 1.4
04_04_1330 - 32700333-32700770 30 1.8
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 30 2.4
12_02_0320 - 17504511-17505016,17505757-17506147 29 4.3
05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004 29 5.6
05_01_0570 + 5061600-5062142,5062790-5062972 29 5.6
04_04_0780 + 28029920-28030621 29 5.6
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 29 5.6
08_01_0350 - 3087631-3088461 28 7.4
02_05_0781 + 31715100-31715672 28 7.4
08_01_0349 - 3082700-3083407 28 9.8
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 28 9.8
05_07_0104 + 27715123-27715350 28 9.8
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410... 28 9.8
>07_03_1774 +
29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/57 (43%), Positives = 30/57 (52%)
Frame = -1
Query: 772 HPLXQGFT*CYXVXPKDHSTLTEEXCKPVGSRYDGQVAVFGREFQKKLGQLKYFIVG 602
HPL Q F V L E KP SRYD Q++VFG + QKKL + F+VG
Sbjct: 449 HPLYQFFY-FDSVESLPTYPLDSEDIKPSNSRYDAQISVFGSKLQKKLEEANTFVVG 504
>12_01_0038 -
312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/57 (43%), Positives = 29/57 (50%)
Frame = -1
Query: 772 HPLXQGFT*CYXVXPKDHSTLTEEXCKPVGSRYDGQVAVFGREFQKKLGQLKYFIVG 602
HPL Q F V L KP +RYD Q++VFG QKKL Q K F+VG
Sbjct: 418 HPLYQFFY-FDSVESLPVEPLEPAELKPENTRYDAQISVFGSNLQKKLEQAKIFMVG 473
>11_01_0039 -
290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/57 (43%), Positives = 29/57 (50%)
Frame = -1
Query: 772 HPLXQGFT*CYXVXPKDHSTLTEEXCKPVGSRYDGQVAVFGREFQKKLGQLKYFIVG 602
HPL Q F V L KP +RYD Q++VFG QKKL Q K F+VG
Sbjct: 542 HPLYQFFY-FDSVESLPVEPLEPAELKPENTRYDAQISVFGSNLQKKLEQAKIFMVG 597
>03_02_0665 -
10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 41.9 bits (94), Expect = 6e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = -1
Query: 712 LTEEXCKPVGSRYDGQVAVFGREFQKKLGQLKYFIVG 602
L + KP+ SRYD Q++VFG + QKK+ F+VG
Sbjct: 562 LDSKDLKPLNSRYDAQISVFGSKLQKKMRDANVFVVG 598
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = +1
Query: 145 TLTPGVRSPSGVKTRSE*GGSRGQHYNQTRGATPRTPDRR 264
TLTP RSPS R S G N TRGA+P +RR
Sbjct: 151 TLTPPRRSPSPASRRMS-ATSSGPTLNGTRGASPVKTNRR 189
>09_04_0378 - 17091407-17092369
Length = 320
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -2
Query: 273 LDDPSVGRPRGGAACLVVVLTAGTPLL*PGFDPRRRSDARCKSAGESFSGWAR 115
LDDP + GA L + + GFDPRR D A ++ SGW R
Sbjct: 231 LDDPRMNPMAAGAPSLTKLACERMLVCSAGFDPRRTRDRAYYDAVKA-SGWGR 282
>04_04_1330 - 32700333-32700770
Length = 145
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 157 GVRSPSGVKTRSE*GGSRGQHYNQTRGATPRTPDRRVVEAIVDDQR 294
G R G E GG R +H + A+P P+R VV + + +R
Sbjct: 20 GSRRRGGGSDGEELGGGRDEHEGERERASPVEPEREVVGVVGERER 65
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 137 SPALLHLASDLRLGSKPGQSRGVPAVNTTTRHAAPPRGRP 256
S L +AS RLG P S G + T R + P +GRP
Sbjct: 465 SGGLSSVASRSRLGITPAASSGDISATPTGRRSTPAKGRP 504
>12_02_0320 - 17504511-17505016,17505757-17506147
Length = 298
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/61 (36%), Positives = 24/61 (39%)
Frame = +2
Query: 89 RSAGVESRPRAHPLNDSPALLHLASDLRLGSKPGQSRGVPAVNTTTRHAAPPRGRPTDGS 268
R G + P AHP N A R + G P V AAPPRGRP G
Sbjct: 52 RQMGPPAAPGAHPENQQAA--------RWTAARGDQELPPYVIMGEAAAAPPRGRPERGD 103
Query: 269 S 271
S
Sbjct: 104 S 104
>05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004
Length = 591
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 151 TPGVRSPSGVKTRSE*GGSRGQHYNQTRGATPRTPDRRVVE 273
+P +RSPSG+K + + G N+ R T R PD ++++
Sbjct: 497 SPMLRSPSGLKNFNAELKAAGYDLNRWRETTRRRPDLQILD 537
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 195 VGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTS 299
VGG ++ RR P TG G +RRPT++
Sbjct: 159 VGGARGRAVRGSARRRPRKEETTGINGTARRPTST 193
>04_04_0780 + 28029920-28030621
Length = 233
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 83 SHIPRAPPRRGDLVGGSALGQEKKK 9
+++ APPRRG+L GG + Q + K
Sbjct: 9 AYLTGAPPRRGELAGGGEIRQAEGK 33
>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 170 RLGSKPGQSRGVPAVNTTTRHAAPPRGRPTDGSS 271
R G + G+ P+ TTRHA P R DG +
Sbjct: 583 RRGGRGGRRLPSPSTRPTTRHALPGEDRSHDGGA 616
>08_01_0350 - 3087631-3088461
Length = 276
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 615 YFSCPSFFW--NSLPKTATCPSYREPTGLXFSSVRVEW 722
YFSCP F W +P A+C + L F V EW
Sbjct: 198 YFSCPVFLWLFGPIPMFASCLAM--VCALYFLDVYTEW 233
>02_05_0781 + 31715100-31715672
Length = 190
Score = 28.3 bits (60), Expect = 7.4
Identities = 23/68 (33%), Positives = 28/68 (41%)
Frame = +2
Query: 86 QRSAGVESRPRAHPLNDSPALLHLASDLRLGSKPGQSRGVPAVNTTTRHAAPPRGRPTDG 265
Q GV RP H + A+ + S Q P RHAA P RP+
Sbjct: 21 QPCIGVSGRPDHHAVGRLQQPAGKAAAAAVVSAAAQ----PQRAAKKRHAAAPPPRPSAS 76
Query: 266 SSRR*STT 289
+SRR STT
Sbjct: 77 TSRRSSTT 84
>08_01_0349 - 3082700-3083407
Length = 235
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +3
Query: 615 YFSCPSFFW--NSLPKTATCPSYREPTGLXFSSVRVEW 722
YFSCP F W +P A C + L F V EW
Sbjct: 178 YFSCPVFLWLFGPIPMFAACLAM--VCALYFLDVYTEW 213
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 163 RSPSGVKTRSE*GGSRGQHYNQTRGATPR 249
+ PS +++R GSRG+ Y+Q +PR
Sbjct: 122 KKPSEMRSRDRISGSRGRSYDQRYSRSPR 150
>05_07_0104 + 27715123-27715350
Length = 75
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 289 GRRLSPRRPVGRASSGWRRVS 227
GRRL P P R W RVS
Sbjct: 31 GRRLHPPAPAARGGGAWNRVS 51
>01_01_0558 +
4098383-4098510,4100462-4100572,4100765-4100853,
4100974-4101107,4101337-4101435,4102619-4102994,
4103883-4104337,4104419-4107409
Length = 1460
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -1
Query: 697 CKPVGSRYDGQVAVFGREFQKKLGQLKYFIVGEYLGL*TLLKGLID 560
C V + ++ + GR +K G L +G Y+ + L++G+I+
Sbjct: 27 CNAVLKEHKTRLYILGRILDEKYGSLSLVRMGPYVTIILLIRGIIE 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,326,929
Number of Sequences: 37544
Number of extensions: 506584
Number of successful extensions: 1499
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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