Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L02
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...    48   1e-05
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...    48   1e-05
AY661556-1|AAV70493.1|  714|Caenorhabditis elegans acetylcholine...    29   3.8  
Z70307-14|CAA94338.2|  409|Caenorhabditis elegans Hypothetical p...    29   5.1  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    29   5.1  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    29   5.1  
U40028-7|AAA81118.1|  155|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
           protein C47E12.5b protein.
          Length = 1028

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/41 (51%), Positives = 30/41 (73%)
 Frame = -1

Query: 724 DHSTLTEEXCKPVGSRYDGQVAVFGREFQKKLGQLKYFIVG 602
           D+S L+E  C+P  SRYDGQ AVFG  +Q+ L + ++F+VG
Sbjct: 399 DNSKLSETDCQPRQSRYDGQAAVFGWPYQECLFRQRWFVVG 439


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
           protein C47E12.5a protein.
          Length = 1113

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/41 (51%), Positives = 30/41 (73%)
 Frame = -1

Query: 724 DHSTLTEEXCKPVGSRYDGQVAVFGREFQKKLGQLKYFIVG 602
           D+S L+E  C+P  SRYDGQ AVFG  +Q+ L + ++F+VG
Sbjct: 484 DNSKLSETDCQPRQSRYDGQAAVFGWPYQECLFRQRWFVVG 524


>AY661556-1|AAV70493.1|  714|Caenorhabditis elegans
           acetylcholine/choline transporter protein.
          Length = 714

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 605 HNKILQLSKFLLEFSTKNSYLPIIS*TDWFAXF 703
           HN +L LSK + +F T N YL +     W A F
Sbjct: 242 HNDVLMLSKGVDDFGTLNWYLGLCVLACWIAVF 274


>Z70307-14|CAA94338.2|  409|Caenorhabditis elegans Hypothetical
           protein C39E9.12 protein.
          Length = 409

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 89  RSAGVESRPRAHPLNDSPALLHLASDLRLGSKPG---QSRGVPAVNTTTRHAAPPRGR 253
           +S  V+SRPR H L+   +L   +S  +   +PG   ++RG+    T  R  AP  GR
Sbjct: 125 QSFEVKSRPRVHRLSTRLSLRASSSTPQTSERPGMPIENRGI----TPVRQRAPSSGR 178


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 564  INPFKSVQSPRYSPTIKYFS--CPSFFWNSLPKTATCPSYREPTGLXFS 704
            ++P  S  SP YSPT   +S   PS+   S   + T PSY  PT   +S
Sbjct: 1608 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYS 1655



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 567  NPFKSVQSPRYSPTIKYFS--CPSFFWNSLPKTATCPSYREPTGLXFSS 707
            +P  S  SPRYSPT   +S   P++   S   + T P+Y  PT   + S
Sbjct: 1665 SPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTY-SPTSPSYES 1712


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 564  INPFKSVQSPRYSPTIKYFS--CPSFFWNSLPKTATCPSYREPTGLXFS 704
            ++P  S  SP YSPT   +S   PS+   S   + T PSY  PT   +S
Sbjct: 1615 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYS 1662



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 567  NPFKSVQSPRYSPTIKYFS--CPSFFWNSLPKTATCPSYREPTGLXFSS 707
            +P  S  SPRYSPT   +S   P++   S   + T P+Y  PT   + S
Sbjct: 1672 SPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTY-SPTSPSYES 1719


>U40028-7|AAA81118.1|  155|Caenorhabditis elegans Hypothetical
           protein T05A7.3 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 112 TAGPPTKRLPCTLTPGVRSPSG 177
           T GPPT   P  +TP   +PSG
Sbjct: 29  TCGPPTPAPPVIITPAPTNPSG 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,510,192
Number of Sequences: 27780
Number of extensions: 417949
Number of successful extensions: 1062
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)