Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L01
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459           31   0.78 
05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069     29   3.2  
04_04_0078 + 22573413-22573554,22573637-22573959,22574681-225753...    29   3.2  
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967...    28   9.6  
07_03_1164 + 24451808-24451868,24452690-24452923,24453735-244537...    28   9.6  
04_04_0347 + 24564589-24565296                                         28   9.6  

>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
          Length = 341

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -1

Query: 574 PPLTPSR--STSRTQ*KRPCRSQLTSPSTGHTQ--STSRSTCLCTLRSPYRTQLRYRYQ 410
           PPL P +  + +    KRP  S  ++ S  H++  S + +TC  +L +  R + R RYQ
Sbjct: 29  PPLLPDQIAAAAAAAAKRPAESSTSASSCFHSEVISATSTTCPTSLAAAQRPEKRPRYQ 87


>05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069
          Length = 228

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 457 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 546
           +GTC    T  G+ TGM TG  T   TG G
Sbjct: 99  SGTCKYPATASGVGTGMGTGTSTGTGTGVG 128


>04_04_0078 +
           22573413-22573554,22573637-22573959,22574681-22575313,
           22575383-22575838
          Length = 517

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 603 LASRHGRALGGQRVL*RGRALVFLPGYGTGFSTGXXLV 716
           +ASR  RA+G Q V+  G AL F  G  TGF+    ++
Sbjct: 102 VASRVTRAMGRQAVMVMGGALFFAGGAVTGFAVNIAML 139


>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
            16196822-16197001,16197090-16197371,16197471-16199141,
            16199257-16199463,16199566-16199700,16199792-16200082,
            16200403-16200621,16200876-16201034,16201120-16201181,
            16201257-16201383,16201460-16201693,16201777-16202003,
            16202163-16202257,16202341-16202468,16202574-16202594,
            16202765-16202921,16203007-16203075,16203228-16203341,
            16203415-16203491,16203576-16203688,16204432-16204507,
            16204592-16204756,16204825-16204952,16205049-16205130,
            16205426-16205548,16205633-16205860,16205933-16206034,
            16206144-16206341,16206581-16206760,16206868-16207020,
            16207690-16207797,16208201-16208355,16208786-16208912,
            16209825-16209914,16209986-16210127,16210303-16210379,
            16210467-16210582,16210638-16210773,16211130-16211198,
            16211279-16211361,16211655-16211720,16211788-16211974,
            16212054-16213547,16213635-16214165,16214234-16214363,
            16214407-16215878,16216359-16216364,16216750-16217055,
            16217364-16217468,16217577-16217772,16217862-16217929,
            16218853-16220631,16221026-16221151,16221604-16221780,
            16221997-16222128,16223461-16223498,16223710-16223788,
            16224175-16224284,16224787-16224935,16225027-16225197,
            16225281-16225552,16226355-16226442,16227942-16228369
          Length = 5157

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 531  FYWVRDVLLDGVRGGHWYLXRGTELASRHGRALGGQRVL*RGRALVFLPGYG 686
            F W   +LL  ++ G W L     LA +    L G   +   RA VF+P  G
Sbjct: 1699 FAWSDGILLQALKNGSWVLLDELNLAPQ--SVLEGLNAILDHRAEVFIPELG 1748


>07_03_1164 +
           24451808-24451868,24452690-24452923,24453735-24453768,
           24454372-24454627
          Length = 194

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 448 SMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 546
           +M  GT F+  TG G +TG   G GT   TG G
Sbjct: 126 TMTPGT-FTPGTGMGTTTGTGMGTGTTTGTGLG 157


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 557 EKHIPYPVEKAVPFPVNIPVDRPYPVH 477
           ++H P PV  + P+P + P   P  +H
Sbjct: 121 DRHAPAPVHSSWPWPAHAPAPAPAVIH 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,854,149
Number of Sequences: 37544
Number of extensions: 279610
Number of successful extensions: 922
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)