Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_L01
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    32   0.53 
U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z77131-6|CAB00856.2|   76|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   8.7  

>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 554 KHIPYPVEKAVPFPVNIPVDRPYPVHI 474
           +H+P PV   VP P+ +PV  P P  +
Sbjct: 154 QHVPVPVPVQVPVPIRVPVPVPVPTPV 180


>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 548 IPYPVEKAVPFPVNIPVDRPYPVHIEKHVPV 456
           +P PV + VP P+ +P+  P P+ +   VPV
Sbjct: 15  VPAPVPQPVPVPMPMPMPMPMPMPVPVPVPV 45



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 545 PYPVEKAVPFPVNIPVDRPYPVHIEKHVPVHI 450
           P PV   VP PV +P+  P P+ +   VPV +
Sbjct: 12  PVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPV 43



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 548 IPYPVEKAVPFPVNIPVDRPYPVHIEKHVPVHI 450
           IP PV    P P  +PV  P P+ +   +PV +
Sbjct: 9   IPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPV 41


>Z77131-6|CAB00856.2|   76|Caenorhabditis elegans Hypothetical
           protein C54C6.5 protein.
          Length = 76

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = -1

Query: 610 EASSVPRXRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLR 446
           EASSVP    Q     PS    R + K  C SQ+ SP  G     ++  CL   R
Sbjct: 21  EASSVPSSEVQNTLFKPSSVVFRAKCKMMC-SQMCSPVLGVCDRYNKCVCLNNYR 74


>U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical
           protein C34E10.8 protein.
          Length = 1024

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -1

Query: 604 SSVPRXRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYR 434
           + +P    Q  PLTPS STS +Q   P +    SP  G +  T RS       +P+R
Sbjct: 574 TELPSRHAQHSPLTPSTSTSSSQLLAPPK----SPQPGTSSQTFRSQASRLPIAPHR 626


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 554 KHIPYPVEKAV--PFPVNIPVDRPYPVHIEKHVPVHIEK 444
           KH P P  K +  P P+ IP   P+P  + K +P H  K
Sbjct: 189 KHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPK 227



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 545 PYPVEKAVPFPVNIPVDRPYPVHIEKHVP 459
           P P+ K +PFP  +P  +P P  + K  P
Sbjct: 238 PMPIPKPMPFPKPMPKPKPKPKPMPKPKP 266


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 574 PPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLR 446
           PP+  +R+ +  + +RP R Q+ SP +G    +  + C+C  R
Sbjct: 187 PPVVVTRAPAIIENERPWRGQVCSPQSG---CSGGAACICGAR 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,135,316
Number of Sequences: 27780
Number of extensions: 218201
Number of successful extensions: 788
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)