Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_K24
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    30   0.43 
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    28   1.8  
SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   5.4  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   7.1  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 23/83 (27%), Positives = 32/83 (38%)
 Frame = -1

Query: 431 PAILSPFSSPPSIEQPKPRQRQHSNSEPELVPVMKKIDETPGYENIMKENQRIIKNKVSE 252
           PAI    +  P    P P  + H    P   PV   I  +     +   N     N VS+
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHH----PPPPPVRSSISPSMPPAPLTHANSSTPMNYVSQ 776

Query: 251 RKPEPPPRALNGIETDPTLVSNL 183
             PE PP++   I+ D  L+  L
Sbjct: 777 --PESPPQSYESIQNDNELLQEL 797


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 425 ILSPFSSPPSIEQPKPRQRQHSNSEPELVP 336
           I + ++SP SI +P P Q+  S+++P  VP
Sbjct: 189 ISTAYASPTSINEPLPDQQLSSSTKPIKVP 218


>SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 377 RQRQHSNSEPELVPVMKKIDETPGYENIMKENQRIIKNKVSERKPEPP 234
           R+R  S +  +    +++ D  P YE I   NQ+ +K   +   P PP
Sbjct: 82  RERSSSGASQQFEHHVRQTDCLPLYEPITALNQQYLKTLPTTSTPPPP 129


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 422 LSPFSSPPSIEQPKPRQRQHSNSEPELVPVMKK 324
           L+PFS  P  E+P P ++  ++ +  L  V KK
Sbjct: 5   LNPFSKKPKDEEPLPLEQYEASEQKILGLVTKK 37


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 350 PELVPVMKKIDETPGYENIMKENQRIIKNKV 258
           P+++PV K  D T       ++N + IKNK+
Sbjct: 872 PKVLPVSKTSDLTDKVNRRQRKNDKKIKNKI 902


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,416
Number of Sequences: 5004
Number of extensions: 36099
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)