Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_K23
(1040 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 148 1e-36
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 70 5e-13
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 63 5e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 62 9e-11
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 47 5e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 39 0.001
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 38 0.002
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.003
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 33 0.088
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 2.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 148 bits (359), Expect = 1e-36
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = -1
Query: 512 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 333
TTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 303 TTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 332 DESGPSIVHRKCF 294
DESGP IV+RKCF
Sbjct: 363 DESGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 70.1 bits (164), Expect = 5e-13
Identities = 35/82 (42%), Positives = 55/82 (67%), Gaps = 6/82 (7%)
Frame = -1
Query: 524 VCPCTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQM 354
VC T++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+
Sbjct: 352 VCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQL 410
Query: 353 WISKQEYDESGP---SIVHRKC 297
WIS+QEY+E G +++ ++C
Sbjct: 411 WISRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 63.3 bits (147), Expect = 5e-11
Identities = 28/73 (38%), Positives = 50/73 (68%)
Frame = -1
Query: 512 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 333
+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY
Sbjct: 308 STLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY 367
Query: 332 DESGPSIVHRKCF 294
++ +++ R+ F
Sbjct: 368 -KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 62.5 bits (145), Expect = 9e-11
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = -1
Query: 512 TTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMWISKQ 339
T++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W+SKQ
Sbjct: 353 TSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQ 412
Query: 338 EYDESG 321
EYDE G
Sbjct: 413 EYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 46.8 bits (106), Expect = 5e-06
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 12/76 (15%)
Frame = -1
Query: 512 TTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-LS 369
++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA ++
Sbjct: 303 SSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMA 362
Query: 368 TFQQMWISKQEYDESG 321
MW+SK E++E G
Sbjct: 363 QNDHMWVSKAEWEEYG 378
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = -1
Query: 503 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 324
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 323 GPSIVHRK 300
G +I+ RK
Sbjct: 391 GANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -1
Query: 500 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 321
PG+ R+++E+T++ P I + W G S + F+ ++++EY E G
Sbjct: 648 PGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKG 707
Query: 320 PSIV 309
P +
Sbjct: 708 PEYI 711
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 440 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 303
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.088
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -1
Query: 503 YPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEY 333
+PG A +++ I + + I +I PP + ++ W G I + ++WI ++
Sbjct: 542 FPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDW 601
Query: 332 DESGPSIVHRK 300
G ++ K
Sbjct: 602 KMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 401 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 300
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,238
Number of Sequences: 5004
Number of extensions: 41127
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 545231778
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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