Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_K22
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   4.3  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   7.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.4  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    25   9.8  

>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 485 MAPDFLSSSKALYEELLESYRVLTYCGNLDQMMPCV-VTSEHYRTWKWSSSDD 330
           M  +  S  + LY  L+  Y + T+C ++D M  CV +  + + ++ W +S +
Sbjct: 716 MLENCASKEELLYVCLI--YTIWTHCTDMDSMDNCVYLCIQKFESYGWGASSE 766


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = -2

Query: 412  TVETWIR*CRAWSHRNIIERGNGVRPMTSL--RLYEILTCLKIDWQGTTKPAVSNEADHP 239
            ++ T++        R ++E GNG  P+ SL   L  +L+ ++     T  P   N  DH 
Sbjct: 916  SLRTFLLAMNTCDEREVLEFGNG--PLVSLIFCLQNLLSTVENFQLSTLPPDTENAVDHV 973

Query: 238  RSRSHGAHGHARPNS 194
             SR       A P S
Sbjct: 974  FSRQFKLRLMALPGS 988


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
 Frame = -1

Query: 440 LLESYRVLTYCGNLDQMMPCV---------VTSEHYRTWKWSSSDDFIKAVRNPYMFKNR 288
           +L++YR   + G +  ++PC          +    Y   +  SS DFI+ +RN Y ++N 
Sbjct: 220 ILQAYRQAAFPG-VQAIIPCFLKMVQIDVPIDIASYAMIEKDSSIDFIEFIRNKYQYRNF 278

Query: 287 LAGYHKT 267
                KT
Sbjct: 279 FMAQVKT 285


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 264 RYLTKLIIRGAGHMAPMDTPDQTAYFITQWTHNE 163
           R LT   I  A HM P D P++    IT + +N+
Sbjct: 415 RNLTFARIVEASHMVPYDHPNEMKTLITAFFNND 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,224
Number of Sequences: 5004
Number of extensions: 56820
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)