Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_K19
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    27   4.1  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    26   5.4  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   7.1  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   7.1  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   9.4  

>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = -3

Query: 398 LQKLQKAQSHIEHDKTSVAPQAAAANDTEPDTKTAQRKRKIVTENAEEQNVGRAHKNEHV 219
           L+K Q+A +  +  +TSV  + A+ +D  PD +   +  + + E   +        N+ +
Sbjct: 29  LEKFQEAIAKYKFMETSVVRRVASLDDKIPDIRKTLQSVQFLKERQGDSFTVTYELNDTL 88

Query: 218 PKKIDVAKKE 189
             K +V  K+
Sbjct: 89  NAKAEVEAKD 98


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 243 PYILFLCVFGDDFSFPLGRFRIGLGVI 323
           PYIL +C+FG+     + R  IGLG++
Sbjct: 236 PYIL-VCIFGEHHLRIVWRLSIGLGLV 261


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 195 KGGHRRLPIPERDLRQVXQRNQQY*ADKGQKVEETKRERLIAKCNVLKIHLW 40
           KG H+        LR +   +  +  +KG+ VE+   E+L+AK N +   +W
Sbjct: 627 KGSHKTSVFIAHRLRTIKDCDIIFVLEKGRVVEQGSHEQLMAK-NSVYTSMW 677


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 322 MTPSPIRKRPNGNEKSSPKTQRNK 251
           +TPSP    P G+++S+PK+  +K
Sbjct: 243 VTPSPHSHSPAGHQQSTPKSTLSK 266


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 531 FVPPYSRYVNYRTLAQEEIAKDIKEMEAKVAAI 433
           F+PPY++ V  R  A+ ++  + K+M +   A+
Sbjct: 427 FIPPYAKRVVPRLSAKYKLVDETKDMGSGATAV 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,891
Number of Sequences: 5004
Number of extensions: 40669
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)