Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_K17
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647...    30   2.1  
03_05_0696 - 26856413-26856416,26857917-26858524,26859041-268591...    28   8.5  
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69...    28   8.5  

>06_01_0850 -
           6472213-6473541,6474229-6474282,6474616-6474671,
           6474824-6476012
          Length = 875

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = -1

Query: 513 NLSTNLPIFIPVYNKLNIVVFKLNKNTRLLKRARNTTNQQHRPPRVSFLLASSV*IEHLT 334
           +L+TNL  ++PV+  L+ ++  L KN+ LL    +   +    P ++FL    +    + 
Sbjct: 630 SLATNLAFWLPVFGSLDSILRALRKNSSLLSANLDKVVK----PNLAFLKQCGIDARDVA 685

Query: 333 ATPILSTKR 307
           + P L + R
Sbjct: 686 SNPNLYSSR 694


>03_05_0696 -
           26856413-26856416,26857917-26858524,26859041-26859101,
           26859181-26859557,26860314-26861156
          Length = 630

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 561 NHNLNTSLNPSPGINLNLSTNLPIFIPVY 475
           NHN + S+ P+PG  L+LS N  I  P Y
Sbjct: 134 NHN-SMSVAPAPGQGLSLSLNTHILAPSY 161


>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
            693391-693518,693951-694010,694113-694163,694704-694821,
            694990-695915,695916-697707,697810-697943,698029-698526
          Length = 1774

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 570  RNTNHNLNTSLNPSPGINLNLST 502
            RNTNHN N SLN    + L+ S+
Sbjct: 1645 RNTNHNTNLSLNHETAVPLSRSS 1667


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,959,585
Number of Sequences: 37544
Number of extensions: 274645
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)