Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_K16
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 127 2e-30
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 127 2e-30
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 103 3e-23
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 55 1e-08
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 29 1.1
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 127 bits (306), Expect = 2e-30
Identities = 60/91 (65%), Positives = 65/91 (71%)
Frame = -3
Query: 704 FXWXXKEGVMAEENLRGXRFNXYDVTLHTDAIHRGGGQIIPTXRRCLYACLLTAQPRXME 525
F W KEG M EENLR RFN DV LH DAIHRGGGQIIPT RR +YA L A P E
Sbjct: 667 FAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQE 726
Query: 524 PVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 432
PV+L EIQ E A+GGIY VLN++RGHVF E
Sbjct: 727 PVFLVEIQVSENAMGGIYSVLNKKRGHVFSE 757
Score = 113 bits (272), Expect = 3e-26
Identities = 51/80 (63%), Positives = 61/80 (76%)
Frame = -1
Query: 442 FSKSPQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQS 263
FS+ +V GTP++ +KAYLPVNESFGFT +LR T GQAFPQ VFDHW + GDP +P S
Sbjct: 755 FSEEQRV-GTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTS 813
Query: 262 KPYNVVQETRKRKGLKEGLP 203
KP +V E RKRKGLKE +P
Sbjct: 814 KPGQIVCEARKRKGLKENVP 833
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 127 bits (306), Expect = 2e-30
Identities = 60/91 (65%), Positives = 65/91 (71%)
Frame = -3
Query: 704 FXWXXKEGVMAEENLRGXRFNXYDVTLHTDAIHRGGGQIIPTXRRCLYACLLTAQPRXME 525
F W KEG M EENLR RFN DV LH DAIHRGGGQIIPT RR +YA L A P E
Sbjct: 667 FAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQE 726
Query: 524 PVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 432
PV+L EIQ E A+GGIY VLN++RGHVF E
Sbjct: 727 PVFLVEIQVSENAMGGIYSVLNKKRGHVFSE 757
Score = 113 bits (272), Expect = 3e-26
Identities = 51/80 (63%), Positives = 61/80 (76%)
Frame = -1
Query: 442 FSKSPQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQS 263
FS+ +V GTP++ +KAYLPVNESFGFT +LR T GQAFPQ VFDHW + GDP +P S
Sbjct: 755 FSEEQRV-GTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTS 813
Query: 262 KPYNVVQETRKRKGLKEGLP 203
KP +V E RKRKGLKE +P
Sbjct: 814 KPGQIVCEARKRKGLKENVP 833
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 103 bits (247), Expect = 3e-23
Identities = 46/94 (48%), Positives = 60/94 (63%)
Frame = -3
Query: 707 GFXWXXKEGVMAEENLRGXRFNXYDVTLHTDAIHRGGGQIIPTXRRCLYACLLTAQPRXM 528
GF W +EG + +E +R F DV L + I+RGGGQIIPT RR Y+ LTA PR M
Sbjct: 782 GFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLM 841
Query: 527 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESP 426
EPVY+ E+ P ++ IY +L RRRGHV ++ P
Sbjct: 842 EPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIP 875
Score = 72.1 bits (169), Expect = 9e-14
Identities = 30/54 (55%), Positives = 40/54 (74%)
Frame = -1
Query: 418 GTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKP 257
G+P+++V+A +PV +S GF DLR +T GQA Q VFDHWQV+PGDP + KP
Sbjct: 878 GSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKP 931
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 54.8 bits (126), Expect = 1e-08
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = -1
Query: 418 GTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 278
GTP FIVKA +PV ESFGF ++ T G A+PQ +F +++L +P
Sbjct: 900 GTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENP 946
Score = 44.8 bits (101), Expect = 2e-05
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = -3
Query: 596 GQIIPTXRRCLYACLLTAQPRXMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 432
GQ+I + + L PR M +Y C++Q +G +YGV+++RRG V +E
Sbjct: 841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDE 895
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/103 (21%), Positives = 37/103 (35%)
Frame = -3
Query: 743 SVPQXN*GLCXXGFXWXXKEGVMAEENLRGXRFNXYDVTLHTDAIHRGGGQIIPTXRRCL 564
+VP C F K+G + ++ RF D H ++
Sbjct: 606 TVPTQYIPACEKAFYEALKKGFLIGHPIKNCRFVLEDGAYHPVDSSELAFRLATIS--AF 663
Query: 563 YACLLTAQPRXMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFE 435
L A P +EP+ I P GG+ G L++R+ + +
Sbjct: 664 RTAFLQANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVD 706
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = -1
Query: 406 FIVKAYLPVNESFGFTADLRSNTGGQ 329
F ++A +P+N F +++D+R+ T G+
Sbjct: 714 FTLQAEVPLNSMFSYSSDIRALTKGK 739
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,518
Number of Sequences: 5004
Number of extensions: 60429
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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