Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_K16
(847 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 161 4e-40
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 161 4e-40
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 100 1e-21
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 100 1e-21
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical ... 30 2.4
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 29 5.5
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 161 bits (392), Expect = 4e-40
Identities = 71/93 (76%), Positives = 80/93 (86%)
Frame = -3
Query: 707 GFXWXXKEGVMAEENLRGXRFNXYDVTLHTDAIHRGGGQIIPTXRRCLYACLLTAQPRXM 528
GF W +EGV+++EN+RG RFN +DVTLH DAIHRGGGQIIPT RR YA +LTA+PR +
Sbjct: 676 GFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLL 735
Query: 527 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEES 429
EPVYL EIQCPE AVGGIYGVLNRRRGHVFEES
Sbjct: 736 EPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEES 768
Score = 144 bits (348), Expect = 9e-35
Identities = 63/75 (84%), Positives = 68/75 (90%)
Frame = -1
Query: 427 QVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNV 248
QV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP E +KP +
Sbjct: 769 QVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQI 828
Query: 247 VQETRKRKGLKEGLP 203
V +TRKRKGLKEG+P
Sbjct: 829 VLDTRKRKGLKEGVP 843
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 161 bits (392), Expect = 4e-40
Identities = 71/93 (76%), Positives = 80/93 (86%)
Frame = -3
Query: 707 GFXWXXKEGVMAEENLRGXRFNXYDVTLHTDAIHRGGGQIIPTXRRCLYACLLTAQPRXM 528
GF W +EGV+++EN+RG RFN +DVTLH DAIHRGGGQIIPT RR YA +LTA+PR +
Sbjct: 676 GFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLL 735
Query: 527 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEES 429
EPVYL EIQCPE AVGGIYGVLNRRRGHVFEES
Sbjct: 736 EPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEES 768
Score = 144 bits (348), Expect = 9e-35
Identities = 63/75 (84%), Positives = 68/75 (90%)
Frame = -1
Query: 427 QVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNV 248
QV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP E +KP +
Sbjct: 769 QVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQI 828
Query: 247 VQETRKRKGLKEGLP 203
V +TRKRKGLKEG+P
Sbjct: 829 VLDTRKRKGLKEGVP 843
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 100 bits (239), Expect = 1e-21
Identities = 43/94 (45%), Positives = 58/94 (61%)
Frame = -3
Query: 707 GFXWXXKEGVMAEENLRGXRFNXYDVTLHTDAIHRGGGQIIPTXRRCLYACLLTAQPRXM 528
GF W +EG + EE +R +F D + T+ ++RGGGQ+IPT RRC Y+ L A PR M
Sbjct: 773 GFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLM 832
Query: 527 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESP 426
EP Y E+ P V +Y VL +RRGHV ++P
Sbjct: 833 EPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAP 866
Score = 70.5 bits (165), Expect = 1e-12
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 12/81 (14%)
Frame = -1
Query: 418 GTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP---------Q 266
G+PM+ + AY+PV +SFGF DLR +T GQAF F HWQ++PGDP + Q
Sbjct: 869 GSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQ 928
Query: 265 SKPY---NVVQETRKRKGLKE 212
P+ + +TR+RKGL E
Sbjct: 929 PTPHLAREFMIKTRRRKGLSE 949
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 100 bits (239), Expect = 1e-21
Identities = 43/94 (45%), Positives = 58/94 (61%)
Frame = -3
Query: 707 GFXWXXKEGVMAEENLRGXRFNXYDVTLHTDAIHRGGGQIIPTXRRCLYACLLTAQPRXM 528
GF W +EG + EE +R +F D + T+ ++RGGGQ+IPT RRC Y+ L A PR M
Sbjct: 648 GFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLM 707
Query: 527 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESP 426
EP Y E+ P V +Y VL +RRGHV ++P
Sbjct: 708 EPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAP 741
Score = 70.5 bits (165), Expect = 1e-12
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 12/81 (14%)
Frame = -1
Query: 418 GTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP---------Q 266
G+PM+ + AY+PV +SFGF DLR +T GQAF F HWQ++PGDP + Q
Sbjct: 744 GSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQ 803
Query: 265 SKPY---NVVQETRKRKGLKE 212
P+ + +TR+RKGL E
Sbjct: 804 PTPHLAREFMIKTRRRKGLSE 824
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/46 (47%), Positives = 26/46 (56%)
Frame = -1
Query: 415 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 278
T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 604 TNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/46 (47%), Positives = 26/46 (56%)
Frame = -1
Query: 415 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 278
T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 793 TNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 838
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = -3
Query: 599 GGQIIPTXRRCLYACLLTAQPRXMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEE 432
GGQ++ + A R + +Y C + A+G ++ VL++R+ V E
Sbjct: 732 GGQMMTAIKASCSAAAKKLALRLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSE 787
>AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical
protein T24A6.11 protein.
Length = 359
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 54 LLSHLRVCFNMTRNMCC*K*TCVKRFPYRYVFLICFNYVV 173
+L+ LR+C+ C + TC K FP ++V L+ ++VV
Sbjct: 290 ILTPLRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 287 REDLPMVEYALREGLSAGVGTQIGSKTERLID 382
+ED+ +EY + E ++ +GTQ+ KT +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,952,580
Number of Sequences: 27780
Number of extensions: 365879
Number of successful extensions: 836
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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