Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_K14
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 231 5e-61
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 216 2e-56
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 180 1e-45
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 171 6e-43
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 157 1e-38
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 29 3.5
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 29 6.0
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 231 bits (565), Expect = 5e-61
Identities = 110/152 (72%), Positives = 125/152 (82%), Gaps = 2/152 (1%)
Frame = -3
Query: 698 FIKGFPMVSIEDPFDQDDWSAWANLTGRT--PIQIVGDDLTVTNPKRIATAVEKKACNCL 525
F+ +P+VSIEDPFDQDDW+ +A LT +QIVGDDL VTNP R+A A+ +K CN L
Sbjct: 321 FVSEYPIVSIEDPFDQDDWATYAKLTDEIGQQVQIVGDDLLVTNPTRVAKAISEKTCNAL 380
Query: 524 LLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCR 345
LLKVNQIGSVTESI+A ++K+ GWG M SHRSGETEDTFIADL VGLSTGQIKTGAPCR
Sbjct: 381 LLKVNQIGSVTESIEAVRMSKRAGWGVMASHRSGETEDTFIADLSVGLSTGQIKTGAPCR 440
Query: 344 SERLAKYNQILRIEEELGVNAKYAGKNFRRPV 249
SERLAKYNQ+LRIEEELG A YAG+ FR PV
Sbjct: 441 SERLAKYNQLLRIEEELGDAAVYAGEKFRAPV 472
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 778 YDLDFKIPDSNPGXY-LSSDKLADVYLTSSKVFP 680
YDL+FK D+N G + +S D L DVY + +P
Sbjct: 294 YDLNFK-EDNNDGSHKISGDSLKDVYKSFVSEYP 326
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 216 bits (527), Expect = 2e-56
Identities = 101/130 (77%), Positives = 112/130 (86%)
Frame = -3
Query: 701 DFIKGFPMVSIEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLL 522
+F+K FP+VSIEDPFDQDDWS+WA+L IQIVGDDL VTNPKRIA A+ KKACN LL
Sbjct: 331 EFVKDFPIVSIEDPFDQDDWSSWASLQSSVNIQIVGDDLLVTNPKRIAEAIGKKACNALL 390
Query: 521 LKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRS 342
LKVNQIG+VTESI A L +K GWG MVSHRSGETED FIADL VGL++GQIKTGAPCRS
Sbjct: 391 LKVNQIGTVTESIQAALDSKAAGWGVMVSHRSGETEDNFIADLAVGLASGQIKTGAPCRS 450
Query: 341 ERLAKYNQIL 312
ERLAKYNQI+
Sbjct: 451 ERLAKYNQIV 460
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 180 bits (439), Expect = 1e-45
Identities = 83/143 (58%), Positives = 106/143 (74%)
Frame = -3
Query: 686 FPMVSIEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQ 507
+P+VSIE PFD+DDW T Q+VGDDL +++P+RI AV + CN L+LK NQ
Sbjct: 337 YPLVSIEQPFDKDDWEHSKKFTTLELCQVVGDDLLMSDPERIKRAVNEYTCNALVLKANQ 396
Query: 506 IGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCRSERLAK 327
+G+VTE+I+ AK WG MVSHRSG+T+D+FIADL VG + GQIK GAPCR E L+K
Sbjct: 397 VGTVTEAIEVVRQAKDAHWGVMVSHRSGDTDDSFIADLAVGAAAGQIKAGAPCRGECLSK 456
Query: 326 YNQILRIEEELGVNAKYAGKNFR 258
YNQ+LRIEEELG + YAG+N+R
Sbjct: 457 YNQLLRIEEELGSDGVYAGENWR 479
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 171 bits (416), Expect = 6e-43
Identities = 89/152 (58%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Frame = -3
Query: 698 FIKGFPMVSIEDPFDQDDWSAWANLTGRT--PIQIVGDDLTVTNPKRIATAVEKKACNCL 525
F+ +P+VSIEDPFDQDDW +A +T +QIVGDDL VTNP R+A A+++K+CN L
Sbjct: 293 FVSEYPIVSIEDPFDQDDWEHYAKMTAEIGEQVQIVGDDLLVTNPTRVAKAIQEKSCNAL 352
Query: 524 LLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQIKTGAPCR 345
LLKVNQIGSVTESI+A ++K+ GWG M SHRSGETEDTFIADL VGL+T
Sbjct: 353 LLKVNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLAT---------- 402
Query: 344 SERLAKYNQILRIEEELGVNAKYAGKNFRRPV 249
+LRIEEELG A YAG FR PV
Sbjct: 403 ---------LLRIEEELGAAAVYAGAKFRAPV 425
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 157 bits (380), Expect = 1e-38
Identities = 91/166 (54%), Positives = 106/166 (63%), Gaps = 16/166 (9%)
Frame = -3
Query: 698 FIKGFPMVSIEDPFDQDDWSAWANLTGRT--PIQIVGDDLTVTNP--------------K 567
F+ +P+VSIEDPFDQDDW +A +T +QIVGDDL VTNP +
Sbjct: 257 FVSEYPIVSIEDPFDQDDWVHYAKMTEEIGDQVQIVGDDLLVTNPTFPCWLQYSNQFDLQ 316
Query: 566 RIATAVEKKACNCLLLKVNQIGSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVV 387
R+A A++ KACN LLLKVNQIGSVTESI+A ++K+ GWG M SHRSGETEDTFIADL V
Sbjct: 317 RVAKAIKDKACNALLLKVNQIGSVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAV 376
Query: 386 GLSTGQIKTGAPCRSERLAKYNQILRIEEELGVNAKYAGKNFRRPV 249
GLST +LRIEEELG A YAG FR PV
Sbjct: 377 GLST-------------------LLRIEEELGAAAVYAGAKFRAPV 403
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 730 SSDKLADVYLTSSKVFP--WCPLRILLTRMIGLHGLTSLVARLFRLL 596
++D L +++L +S FP W P+R LL + HG A R L
Sbjct: 80 AADDLRELFLQASARFPLSWRPVRRLLDHLTAAHGFAHSPATAARFL 126
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -1
Query: 310 ALKRNLASTPNTPGRTSVDRSKNSLKKT*NSVFLSYPHFDSNKKSSIDY 164
ALKR + T G S+DRS +SLK + V S P+ +S SS Y
Sbjct: 515 ALKRPMGKTD---GNISLDRSNSSLKGSLYRVNESNPNMESTGASSHQY 560
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,472,062
Number of Sequences: 37544
Number of extensions: 418599
Number of successful extensions: 1000
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -