Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_K13
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    27   2.7  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   3.5  
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    26   8.2  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.2  

>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 230 SKIEELNPKQGSDSEPVETLEAGLKTDDSETLEVPEES 117
           SKI  L  ++ + S+   T+  G  TDD   L VP+ S
Sbjct: 64  SKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLS 101


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
 Frame = -2

Query: 281 FQGNEAIKSEIIQKDFDSKIEE-----LNPKQGSDSEPVETLEAGLKTDDSETL 135
           +Q  E  K +II    D  +EE      N     DSE   T E  L +DD E L
Sbjct: 320 YQLGEVFKDQIIPLAIDCFLEEGDLSDFNQMDEEDSEDAYTDEEDLSSDDEEIL 373


>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 230 SKIEELNPKQGSDSEPVETLEAGLKTDDSETLEVPEES 117
           SKI  L  ++ +  E   T+  G  TDD   L VP+ S
Sbjct: 64  SKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLS 101


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -2

Query: 266 AIKSEIIQKDFDSKIEELNPKQGSDSEPVETLEAGLKTDDSETLEVPEESQ 114
           A + + IQ++F+ +I +L  +Q      +E LEA  +  +SET +  ++ +
Sbjct: 134 AKEEQKIQEEFERQITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKE 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,928
Number of Sequences: 5004
Number of extensions: 39945
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)