Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_K13
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46787-6|CAA86744.1|  392|Caenorhabditis elegans Hypothetical pr...    32   0.62 
AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical ...    30   1.9  
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    29   4.4  

>Z46787-6|CAA86744.1|  392|Caenorhabditis elegans Hypothetical
           protein C16C10.6 protein.
          Length = 392

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = -2

Query: 248 IQKDFDSKIEELNPK-QGSDSEPVETLEAGLKTDDSETLEVPEESQ 114
           ++K  DS  EE++PK + SD +P E L+  + +DDS+  + P+  Q
Sbjct: 208 VRKREDSD-EEIDPKPEKSDKKPAEKLKKSIYSDDSDEEKAPKPPQ 252


>AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical
           protein H42K12.3 protein.
          Length = 522

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 269 EAIKSEII-QKDFDSKIEELNPKQGSDSEPVETLEAGLKTDDSE--TLEVP 126
           E +K E+  ++ FD K EE N + G D E  E  E   +T + E  T E P
Sbjct: 250 EEVKPEMKPEEQFDEKQEETNAQTGEDEEEYEDEEVTEETTEEEVTTTEAP 300


>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
           protein Y110A7A.16 protein.
          Length = 1250

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 257 SEIIQKDFDSKIEELNPKQGSDSEPVETLEAG--LKTDDSETLEV 129
           S+I+  DFD+K+  ++ + G   E V  +EAG  L   DS++  V
Sbjct: 613 SDILLIDFDNKLRFIDAESGKTLEDVRNVEAGCELVACDSQSANV 657


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,029,026
Number of Sequences: 27780
Number of extensions: 221560
Number of successful extensions: 710
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)