Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_K09
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    28   1.8  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   4.1  
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    26   7.2  

>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 796 GPEGRPT-QGPYEDDEGMVGDDPAAYLTNEAHDAPVGDEIASTAE 665
           G +G+ +    +EDD G        YL N + D+P  DE+A  +E
Sbjct: 2   GKKGKKSGYADWEDDLGEDISGQNEYLDNTSQDSPQNDELAEKSE 46


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 16  FAKVQTLLTSLNHYQLDS*FSTYDKLITSLL 108
           F  + +L+TS   Y+L S F+  DKL  SLL
Sbjct: 695 FIFLLSLITSQQDYELQSKFAGCDKLFLSLL 725


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 733 PAAYLTNEAHDAPVGDEIASTAEPDATEHSV-PRQRHVGAPRLLKSGLVVV 584
           PA  + + A   PV D+I  T       H++ P+ R +G P +LK+G+V +
Sbjct: 138 PAGPVYSRAGQIPVEDDILLT-------HTLEPQVRQLGMPTVLKNGVVTL 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,607
Number of Sequences: 5004
Number of extensions: 47684
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)