Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_K09
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593 32 0.61
02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722 31 1.4
10_08_0331 - 16831646-16834756 29 3.3
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657 29 3.3
01_01_0490 + 3620523-3623403,3623524-3623996 29 3.3
01_01_0978 + 7738232-7740848,7740929-7741320 29 5.7
11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080... 28 7.5
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189... 28 7.5
10_08_0332 - 16843295-16843356,16843884-16846656 28 7.5
12_01_0722 + 6355972-6359031 28 9.9
07_03_1528 + 27474973-27475289,27476890-27477073,27477081-274772... 28 9.9
03_05_0377 + 23613181-23613342,23614469-23614501,23614606-236148... 28 9.9
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283... 28 9.9
>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
Length = 1278
Score = 31.9 bits (69), Expect = 0.61
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 612 RGAPTCRWRGTECSVASGSA 671
R AP C WRG C A+G A
Sbjct: 48 RAAPVCAWRGVACDAAAGGA 67
>02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722
Length = 1155
Score = 30.7 bits (66), Expect = 1.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 621 PTCRWRGTECSVASG 665
P CRWRG C VA+G
Sbjct: 78 PLCRWRGVSCGVAAG 92
>10_08_0331 - 16831646-16834756
Length = 1036
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 612 RGAPTCRWRGTECSVASGSAV 674
R +P C WRG C A G V
Sbjct: 54 RASPVCTWRGVGCDAAGGGRV 74
>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
Length = 1136
Score = 29.5 bits (63), Expect = 3.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 597 PDFNKRGAPTCRWRGTEC 650
P + R P CRWRG C
Sbjct: 53 PTWGNRSVPVCRWRGVAC 70
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 588 TTKPDFNKRGAPTCRWRGTECSVASGSAVD 677
T PD+N A CRW G C+ A+G +
Sbjct: 54 TALPDWNPADASPCRWTGVRCN-ANGRVTE 82
>01_01_0978 + 7738232-7740848,7740929-7741320
Length = 1002
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +3
Query: 600 DFNKRGAPTCRWRGTECSV-ASGSAVDAIS 686
D+N R A C W G C G AV IS
Sbjct: 46 DWNARDATPCSWTGVSCDAGVGGGAVTGIS 75
>11_06_0109 +
20202629-20205452,20206354-20206578,20207208-20208091,
20208692-20208814
Length = 1351
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 603 FNKRGAPTCRWRGTECSVASGSAV 674
F +RG C+WRG CS +G +
Sbjct: 53 FWRRGDDCCQWRGIRCSNRTGHVI 76
>10_08_0704 -
20018477-20018542,20018693-20018704,20018731-20018927,
20018928-20018999,20019159-20021289
Length = 825
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 612 RGAPTCRWRGTECSVASGSA 671
R AP C WRG C A A
Sbjct: 59 RAAPVCTWRGVACDAAGSVA 78
>10_08_0332 - 16843295-16843356,16843884-16846656
Length = 944
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +3
Query: 612 RGAPTCRWRGTEC--SVASGSAV 674
R AP C WRG C S A+G+ V
Sbjct: 53 RAAPVCAWRGVACDASAAAGARV 75
>12_01_0722 + 6355972-6359031
Length = 1019
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 615 GAPTCRWRGTECSVASGSAVDAI 683
G CRW G C A G AV ++
Sbjct: 79 GTDCCRWEGIRCGGAQGRAVTSL 101
>07_03_1528 +
27474973-27475289,27476890-27477073,27477081-27477261,
27477270-27478206,27478384-27479035,27479352-27479798
Length = 905
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -2
Query: 626 CWRPPLIKVRLGSCT--FLNYRLATEFNKS-IILL*VIS-VRFP 507
CW PP + +G CT F L + S I+LL IS +RFP
Sbjct: 201 CWLPPYFTITIGICTKSFSRTHLPCGYLLSAIVLLVTISRLRFP 244
>03_05_0377 +
23613181-23613342,23614469-23614501,23614606-23614879,
23615105-23615585,23616174-23616846
Length = 540
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 288 YSEDGGKSFDTSRQHLQLYYKY 353
Y E+ G DTSRQ +Q Y Y
Sbjct: 341 YKEENGDKVDTSRQQMQRYTHY 362
>01_01_0359 +
2829325-2832076,2832223-2832593,2833335-2833695,
2833799-2833868,2834021-2834108,2834325-2834580,
2834758-2834883,2835217-2835425
Length = 1410
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 603 FNKRGAPTCRWRGTECSVASGSAVDAISSPT 695
+N GA C W G CS + V ++S P+
Sbjct: 49 WNSSGASFCNWEGVTCSRRRPTRVASLSLPS 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,791,432
Number of Sequences: 37544
Number of extensions: 285688
Number of successful extensions: 717
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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