Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_K07
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 267 1e-72
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 263 2e-71
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 110 2e-25
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 60 4e-10
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.26
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 29 0.61
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.4
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 5.7
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.7
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.5
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.5
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 7.5
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 9.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 267 bits (654), Expect = 1e-72
Identities = 131/206 (63%), Positives = 153/206 (74%), Gaps = 2/206 (0%)
Frame = -1
Query: 742 SSITXSLRFDGALNXTSPSSRLTWCLTPVSTSHWSRTRQSSL-PRRPTMNSFPSPRSQTH 566
SSIT SLRF G+LN + L P H+ S + + S + T+
Sbjct: 240 SSITASLRFAGSLNVDLNEFQTN--LVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITN 297
Query: 565 ASSPP-NQMVKYDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKV 389
P NQMVK DPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+
Sbjct: 298 QCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKI 357
Query: 388 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM 209
GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGM
Sbjct: 358 GICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGM 417
Query: 208 EEGEFSEAREDLAALEKDYEEVGMDS 131
EEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 418 EEGEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 263 bits (645), Expect = 2e-71
Identities = 129/206 (62%), Positives = 152/206 (73%), Gaps = 2/206 (0%)
Frame = -1
Query: 742 SSITXSLRFDGALNXTSPSSRLTWCLTPVSTSHWSRTRQSSL-PRRPTMNSFPSPRSQTH 566
SSIT SLRF+G+LN + L P H+ + + + S + T+
Sbjct: 236 SSITASLRFEGSLNVDLAEFQTN--LVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITN 293
Query: 565 ASSPP-NQMVKYDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKV 389
P NQMVK DPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+
Sbjct: 294 QCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKI 353
Query: 388 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM 209
GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGM
Sbjct: 354 GICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGM 413
Query: 208 EEGEFSEAREDLAALEKDYEEVGMDS 131
EEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 414 EEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 110 bits (265), Expect = 2e-25
Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 5/208 (2%)
Frame = -1
Query: 742 SSITXSLRFDGALNXTSPSSRLTWCLTPVSTSHWSRTRQSSLPR--RPTMNSFPSPRSQT 569
+ +T S RF G LN S +L + P H+ + L + + P
Sbjct: 234 AGVTTSFRFPGELN--SDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQ 291
Query: 568 HASSPPNQMVKYDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKV 389
N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P
Sbjct: 292 QMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLK 351
Query: 388 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM 209
+ PP DL + + + N+T+I E + RL +F M+ ++AF+HWY GEGM
Sbjct: 352 AVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGM 403
Query: 208 EEGEFSEAR---EDLAALEKDYEEVGMD 134
+E EF+EA DL + + Y+E G+D
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 60.1 bits (139), Expect = 4e-10
Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Frame = -1
Query: 556 PPNQMVKYDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 380
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++
Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361
Query: 379 YQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE- 203
+ P + ++ + ML+N T+IA + R ++D + + AF+ Y E + E
Sbjct: 362 KKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFED 416
Query: 202 --GEFSEAREDLAALEKDYE 149
EF +R+ +A L +YE
Sbjct: 417 DLNEFDSSRDVVADLINEYE 436
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 698 DLTEFQTNLVPYPRIHFPLVTYAP 627
DL +L+P PR HF L +Y P
Sbjct: 252 DLVSIIASLIPSPRCHFLLTSYTP 275
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.26
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 489 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 355
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 29.5 bits (63), Expect = 0.61
Identities = 26/110 (23%), Positives = 44/110 (40%)
Frame = -1
Query: 745 FSSITXSLRFDGALNXTSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTH 566
FS I SL +N + ++ + C+ + + S Q+ L R + S ++
Sbjct: 441 FSWIPSSLLEVFYVNDETTNAAVEICMAELVLQYLSSDTQTRLNRLFLSIKYFSEKAMRV 500
Query: 565 ASSPPNQMVKYDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFV 416
+ VKY Y+ CC Y G V+ D + T K K+ I +
Sbjct: 501 FILLLQRQVKYSELLNYYIECCKNYNGGVMDNDEES--ITNKLKKVIDII 548
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 285 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 112
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 111 EPKSTK 94
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 590 SVAEITNACFEPAKPDGEIRPPSWQV 513
SV ++T ACFEP+ ++ P W +
Sbjct: 800 SVTKVTCACFEPSLDYVVVKIPRWDL 825
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 453 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 367
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 694 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSP 554
SPS LT L S++ S + + + R+ T +S SP+ Q+ S+P
Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 472 WVRRHHGTAYSKPCTCHDGG 531
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 598 NSFPSPRSQTHASSPPNQMVKYDPRH 521
N+ PS + ++ S+ PNQ +K P+H
Sbjct: 234 NAPPSIPANSNNSASPNQRIKASPKH 259
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 628 QSSLPRRPTMNSFPSPRSQTHASSPP 551
+ SLPRRP+ +P S T ++ PP
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPP 763
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 456 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 361
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -2
Query: 534 TTPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 367
+TPV ++ CT TS P T + S P +N +T S TS P
Sbjct: 437 STPVTSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,694
Number of Sequences: 5004
Number of extensions: 66397
Number of successful extensions: 277
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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