Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_K06
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 156 4e-39
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 91 2e-19
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 87 2e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 2e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 63 4e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 48 2e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 46 5e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 39 7e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 29 1.0
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.8
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.5
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 7.2
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 156 bits (378), Expect = 4e-39
Identities = 73/94 (77%), Positives = 76/94 (80%)
Frame = -1
Query: 785 EKLWYVXLDFEQEMATXAXXXXXEKSYXFPDGQVITIGNERFRCPEALFQPSFLGMEACG 606
EKL YV LDFEQE+ T A EKSY PDGQVITIGNERFR PEALFQPS LG+E G
Sbjct: 214 EKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAG 273
Query: 605 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 504
IHE TYNSIMKCDVDIRKDLY N V+SGGTTMYP
Sbjct: 274 IHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYP 307
Score = 136 bits (330), Expect = 3e-33
Identities = 62/68 (91%), Positives = 66/68 (97%)
Frame = -2
Query: 502 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 323
GIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP
Sbjct: 308 GIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 367
Query: 322 SIVHRKCF 299
IV+RKCF
Sbjct: 368 GIVYRKCF 375
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 91.1 bits (216), Expect = 2e-19
Identities = 43/93 (46%), Positives = 57/93 (61%)
Frame = -1
Query: 785 EKLWYVXLDFEQEMATXAXXXXXEKSYXFPDGQVITIGNERFRCPEALFQPSFLGMEACG 606
EKL YV D E + ++Y PDG+VI +G+ER+ CPE LFQP +G E G
Sbjct: 214 EKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPG 273
Query: 605 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 507
+ E +++I DVDIRK LY VLSGG++MY
Sbjct: 274 LSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMY 306
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -2
Query: 448 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 326
K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 87.4 bits (207), Expect = 2e-18
Identities = 40/92 (43%), Positives = 53/92 (57%)
Frame = -1
Query: 785 EKLWYVXLDFEQEMATXAXXXXXEKSYXFPDGQVITIGNERFRCPEALFQPSFLGMEACG 606
EK YV DF E+ + +Y PD Q IT+G E F PE LF P +G EA G
Sbjct: 219 EKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASG 278
Query: 605 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 510
+H + SI+ D+D+R LY+N VLSGG+T+
Sbjct: 279 LHIQLFKSILLSDIDLRSTLYSNIVLSGGSTL 310
Score = 61.3 bits (142), Expect = 2e-10
Identities = 27/68 (39%), Positives = 47/68 (69%)
Frame = -2
Query: 502 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 323
G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++
Sbjct: 313 GFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQ 371
Query: 322 SIVHRKCF 299
+++ R+ F
Sbjct: 372 NVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.5 bits (150), Expect = 2e-11
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Frame = -2
Query: 502 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDE 332
G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E
Sbjct: 361 GFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEE 419
Query: 331 SGP---SIVHRKC 302
G +++ ++C
Sbjct: 420 HGSDRLALIEKRC 432
Score = 35.5 bits (78), Expect(2) = 9e-07
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 608 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 510
GI + N I +CDVDIR L N ++ GGT++
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSL 358
Score = 32.7 bits (71), Expect(2) = 9e-07
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 716 EKSYXFPDGQVITIGNERFRCPEALFQP 633
E + FPDG + G ER++ PE LF P
Sbjct: 261 ESEFEFPDGSRMMFGAERYQIPEHLFVP 288
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 63.3 bits (147), Expect = 4e-11
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Frame = -1
Query: 713 KSYXFPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYNSIMKCDVD 561
K + FPDG G ERFR E LF PSF + G+HE Y SI+ CD +
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSE 338
Query: 560 IRKDLYANTVLSGGTTMYP 504
+R L N V++GGT++ P
Sbjct: 339 LRSPLLNNIVVTGGTSLIP 357
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = -2
Query: 502 GIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMWISKQEYDES 329
G+++R+Q E+ LA S + + +VW GGSILASL FQ +W+SKQEYDE
Sbjct: 358 GLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEV 417
Query: 328 G 326
G
Sbjct: 418 G 418
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 48.0 bits (109), Expect = 2e-06
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -1
Query: 683 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 507
I +G ERF PE F P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -2
Query: 445 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 308
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 46.4 bits (105), Expect = 5e-06
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = -1
Query: 689 QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 510
QV+ + NERF PE LF PS + + GI E S+ +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 509 YP 504
+P
Sbjct: 332 FP 333
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 39.1 bits (87), Expect = 7e-04
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = -1
Query: 668 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 504
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG P
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLP 648
Score = 35.1 bits (77), Expect = 0.012
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = -2
Query: 502 GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 323
G+ R+++E+T++ P I + W G S + F+ ++++EY E GP
Sbjct: 649 GMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
Query: 322 SIV 314
+
Sbjct: 709 EYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -2
Query: 502 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDE 332
G A +++ I + + I +I PP + ++ W G I + ++WI ++
Sbjct: 544 GFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKM 603
Query: 331 SGPSIVHRK 305
G ++ K
Sbjct: 604 LGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 406 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 305
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 742 PPXHPAAPSRSLTXFPTVRSSPSET 668
PP HPA+ + TV+SSPS T
Sbjct: 75 PPQHPASINSRRVASYTVQSSPSRT 99
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 757 SSRRWPPXHPAAPSRSLTXFPTVRSSPSETKDSVAQRLSSNP 632
SS R P +P+AP+R PTV++S S A+ ++ P
Sbjct: 350 SSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 481 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 371
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,973
Number of Sequences: 5004
Number of extensions: 58760
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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