Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_J23
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 38 0.002
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.12
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 0.66
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 29 0.87
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 2.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 3.5
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 27 3.5
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 27 4.6
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Frame = -3
Query: 443 QAVDDKRDSRAAPSAQSVHAFESDNTKQSTSMVVFSYLPPSVDLQALSNKMREVGEVKFV 264
+ VDDKR R H F + ++ +++ D+ + K V V
Sbjct: 237 EEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLI----DLKDDITEEAEKCGRVTNVVLY 292
Query: 263 DVLGMGRAIVSFFNVRDAERCVKFFDGSKVDGQTIEVK-YXLKIRY 129
D G V F N +AE CV+ G DG+ +E Y K+R+
Sbjct: 293 DKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRF 338
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = -3
Query: 419 SRAAPSAQSVHAFESDNTKQSTSMVVFSYLPPSVDLQALSNKMREVGEVKFVDVLGMGR- 243
+R +P +S+ F S NT S ++ + + LP S + + + G+++ + +L
Sbjct: 279 ARPSPLPESIQNFCS-NTAASRNVFIGN-LPSSYHEKEIEEAFGKFGKIEHIKILSKKNI 336
Query: 242 AIVSFFNVRDAERCVK 195
A V F N+RDA + V+
Sbjct: 337 AFVHFLNIRDAIKVVR 352
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.5 bits (63), Expect = 0.66
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -3
Query: 314 LQALSNKMREVGEVKFVDVLGMGRAIVSFFNVRDAERCVKFFDGSKVDGQTIEVKYXLKI 135
L L ++ +V K + + A + F N DA++ +++ + S V+ IEV L
Sbjct: 25 LPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRALDY 84
Query: 134 RYAVADRR*Y 105
R A R Y
Sbjct: 85 RSANEKLRPY 94
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 29.1 bits (62), Expect = 0.87
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +3
Query: 81 LLQPTIPLILSSVRHGITYLQXVLHFNSLSVHFGAVKEFDTTLGVAHVEEADDRPTHAQH 260
LLQ + + SS+ G+ YLQ ++ S +FG +F LG+ H + +DD P+ Q+
Sbjct: 335 LLQSDVSAVQSSLLIGL-YLQSTIYEKSSFAYFGLAIKFAVALGL-H-KNSDD-PSLTQN 390
Query: 261 IHEL 272
EL
Sbjct: 391 SKEL 394
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 427 SETAGPPPPRSPYTHLNLTTP 365
S T GPPPP P ++ TTP
Sbjct: 422 SHTYGPPPPVQPKPKISPTTP 442
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = -3
Query: 377 SDNTKQSTSMVVFSYLPPSV----DLQALSNKMREVGEVKFVDVLGMGRAIVSFFNVRDA 210
S T +S + PP D+ L N + + + D + MG+AIVS F +
Sbjct: 252 SKATLKSMKEAILKKYPPGTATETDVAYLINSLVAIHDYGAWDTVLMGKAIVSSFENLNW 311
Query: 209 ERCVKFFDGSK 177
E + FD K
Sbjct: 312 EAMLSMFDNPK 322
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 27.1 bits (57), Expect = 3.5
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = -3
Query: 425 RDSRAAPS---AQSVHAFESDNTKQSTSMVVFSYLP--PSVDLQALSNKMREVGEVKFVD 261
R+++ PS +QS A T++V+ + P S D+ A E+ + D
Sbjct: 74 RENQTKPSNSNSQSNGAISIRGIAGPTNVVIENLAPGTSSDDVAATLLNFGEILNCQVND 133
Query: 260 VLGMGRAIVSFFNVRDAERCVKFFDGSKVDG 168
G RA V F + A++ V+ DG DG
Sbjct: 134 SQGKVRASVRFSTLASAQQVVQKLDGVTADG 164
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 269 FVDVLGMGRAIVSFFNVRDAERCVKFFDGSKVDGQTI 159
F + + + I F ++ DAE+ V++ K+DG+ I
Sbjct: 167 FSETGDLKKGIAIFQDLSDAEQAVQYLSNCKIDGRLI 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,503
Number of Sequences: 5004
Number of extensions: 49748
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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