Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_J23
(877 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 51 9e-07
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 40 0.002
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 40 0.002
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 36 0.050
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 36 0.050
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 35 0.066
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 34 0.12
Z37092-7|CAA85457.1| 472|Caenorhabditis elegans Hypothetical pr... 31 0.82
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 31 0.82
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 31 0.82
AY037793-1|AAK94758.1| 472|Caenorhabditis elegans GLY-1 protein. 31 0.82
AY037792-2|AAK94757.1| 472|Caenorhabditis elegans GLY-1 protein. 31 0.82
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 31 1.1
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 31 1.1
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 31 1.1
U00043-5|AAN65292.1| 505|Caenorhabditis elegans Hypothetical pr... 30 1.9
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr... 30 1.9
AC006603-3|AAF39750.1| 204|Caenorhabditis elegans Hypothetical ... 30 1.9
AF077545-1|AAC26306.2| 506|Caenorhabditis elegans Hypothetical ... 29 5.8
Z81457-3|CAB03815.1| 279|Caenorhabditis elegans Hypothetical pr... 28 7.6
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 28 7.6
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 28 7.6
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 28 7.6
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 51.2 bits (117), Expect = 9e-07
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = -3
Query: 368 TKQSTSMVVFSYLPPSVDLQALSNKMREVGEVKFVDVLGMGRAIVSFFNVRDAERCVKFF 189
T Q+T +++ LP Q + +++R GEV VD++ G A + F +DAER
Sbjct: 380 TPQATRVIIIRNLPSDYTWQIVRDRVRNFGEVDSVDMMAPGAARIRFATFQDAERARAAL 439
Query: 188 DGSKVDGQTIEVKY 147
GS V+G+ I V Y
Sbjct: 440 YGSTVEGRMISVDY 453
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = -3
Query: 347 VVFSYLPPSVDLQALSNKMREVGEVKFVDVLGMGRAIVSFFNVRDAERCVKFFDGSKVDG 168
V+ LPP+ Q L + MR+ G+V + DV G +V F D + V+ D +K
Sbjct: 125 VIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRS 184
Query: 167 QTIEVKYXLKIR 132
E Y +++R
Sbjct: 185 HEGETAY-IRVR 195
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = -3
Query: 332 LPPSVDLQALSNKMREVGEVKFVDVL---GMGRAIVSFFNVRDAERCVKFFDGSKVDGQT 162
LP V + + + + G +K+VD+ G A V F + RDAE V+ DG + DG+
Sbjct: 16 LPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRR 75
Query: 161 IEVKY 147
I V++
Sbjct: 76 IRVEF 80
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = -3
Query: 347 VVFSYLPPSVDLQALSNKMREVGEVKFVDVLGMGRAIVSFFNVRDAERCVKFFDGSKVDG 168
V+ LPP+ Q L + MR+ G+V + DV G +V F D + V+ D +K
Sbjct: 125 VIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRS 184
Query: 167 QTIEVKYXLKIR 132
E Y +++R
Sbjct: 185 HEGETAY-IRVR 195
Score = 37.5 bits (83), Expect = 0.012
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = -3
Query: 332 LPPSVDLQALSNKMREVGEVKFVDVL---GMGRAIVSFFNVRDAERCVKFFDGSKVDGQT 162
LP V + + + + G +K+VD+ G A V F + RDAE V+ DG + DG+
Sbjct: 16 LPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRR 75
Query: 161 IEVKY 147
I V++
Sbjct: 76 IRVEF 80
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 35.5 bits (78), Expect = 0.050
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = -3
Query: 410 APSAQSVHAFESDNTKQ-STSMVVFSYLPPSVDLQALSNKMREVGEVKFV--DVLGMGRA 240
AP+ +S + +D ++ S + F Y P DL A+ K+ V +V+ + + G
Sbjct: 85 APNDRSTSSSSTDGPRRLHVSNIPFKYREP--DLTAMFEKVGPVVDVEIIFNERGSKGFG 142
Query: 239 IVSFFNVRDAERCVKFFDGSKVDGQTIEV 153
V+ N DA+R F+G+ ++G+ +EV
Sbjct: 143 FVTMQNPDDADRARAEFNGTTIEGRRVEV 171
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 35.5 bits (78), Expect = 0.050
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = -3
Query: 410 APSAQSVHAFESDNTKQ-STSMVVFSYLPPSVDLQALSNKMREVGEVKFV--DVLGMGRA 240
AP+ +S + +D ++ S + F Y P DL A+ K+ V +V+ + + G
Sbjct: 85 APNDRSTSSSSTDGPRRLHVSNIPFKYREP--DLTAMFEKVGPVVDVEIIFNERGSKGFG 142
Query: 239 IVSFFNVRDAERCVKFFDGSKVDGQTIEV 153
V+ N DA+R F+G+ ++G+ +EV
Sbjct: 143 FVTMQNPDDADRARAEFNGTTIEGRRVEV 171
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 35.1 bits (77), Expect = 0.066
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Frame = -3
Query: 362 QSTSMVVFSYLPPSVDLQALSNKMREVGEVKFVDVL-------GMGRAIVSFFNVRDAER 204
+S + ++ +YLP + + + + +GE++ ++ +G V++ DA R
Sbjct: 39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALR 98
Query: 203 CVKFFDGSKVDGQTIEVKY 147
V F+G ++ +TI+V Y
Sbjct: 99 AVSSFNGLRLQNKTIKVSY 117
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/89 (22%), Positives = 43/89 (48%)
Frame = -3
Query: 416 RAAPSAQSVHAFESDNTKQSTSMVVFSYLPPSVDLQALSNKMREVGEVKFVDVLGMGRAI 237
R +P+A+S + K + V+ ++L + + ++ +F + + G
Sbjct: 121 RRSPAARSASPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNV-DLPPDRFHNHVHRGYGY 179
Query: 236 VSFFNVRDAERCVKFFDGSKVDGQTIEVK 150
V + N+ DAE+ +K DG ++DG + V+
Sbjct: 180 VEYDNLEDAEKSIKHMDGGQIDGMAVHVE 208
>Z37092-7|CAA85457.1| 472|Caenorhabditis elegans Hypothetical
protein F44F4.6 protein.
Length = 472
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +3
Query: 177 FGAVKEFDTTLGVAHVEEADDRPTHAQHIHELHLADLPHLVAEGLEVHARRQITKDHH 350
FG VK+F GV +EE RP H+L+L P L+ RR ++ D H
Sbjct: 369 FGKVKDFSCVFGVEDIEEIMTRPELV--AHKLYLEFQPAAFMCMLKEVRRRSLSPDAH 424
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 31.5 bits (68), Expect = 0.82
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Frame = -3
Query: 422 DSRAAPSAQSVHAFESDNTKQSTSMVVFSYLPPSVDLQALSNKMREVGEVKF----VDVL 255
D RAAP + + + DN T+ P+ DL+ + ++G+V
Sbjct: 8 DRRAAPDINGLTSLKIDNLSYQTT--------PN-DLRRTFERYGDIGDVHIPRDKYSRQ 58
Query: 254 GMGRAIVSFFNVRDAERCVKFFDGSKVDGQTIEV 153
G V F+ RDAE + DG VDG+ + V
Sbjct: 59 SKGFGFVRFYERRDAEHALDRTDGKLVDGRELRV 92
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 31.5 bits (68), Expect = 0.82
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Frame = -3
Query: 422 DSRAAPSAQSVHAFESDNTKQSTSMVVFSYLPPSVDLQALSNKMREVGEVKF----VDVL 255
D RAAP + + + DN T+ P+ DL+ + ++G+V
Sbjct: 8 DRRAAPDINGLTSLKIDNLSYQTT--------PN-DLRRTFERYGDIGDVHIPRDKYSRQ 58
Query: 254 GMGRAIVSFFNVRDAERCVKFFDGSKVDGQTIEV 153
G V F+ RDAE + DG VDG+ + V
Sbjct: 59 SKGFGFVRFYERRDAEHALDRTDGKLVDGRELRV 92
>AY037793-1|AAK94758.1| 472|Caenorhabditis elegans GLY-1 protein.
Length = 472
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +3
Query: 177 FGAVKEFDTTLGVAHVEEADDRPTHAQHIHELHLADLPHLVAEGLEVHARRQITKDHH 350
FG VK+F GV +EE RP H+L+L P L+ RR ++ D H
Sbjct: 369 FGKVKDFSCVFGVEDIEEIMTRPELV--AHKLYLEFQPAAFMCMLKEVRRRSLSPDAH 424
>AY037792-2|AAK94757.1| 472|Caenorhabditis elegans GLY-1 protein.
Length = 472
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +3
Query: 177 FGAVKEFDTTLGVAHVEEADDRPTHAQHIHELHLADLPHLVAEGLEVHARRQITKDHH 350
FG VK+F GV +EE RP H+L+L P L+ RR ++ D H
Sbjct: 369 FGKVKDFSCVFGVEDIEEIMTRPELV--AHKLYLEFQPAAFMCMLKEVRRRSLSPDAH 424
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -3
Query: 332 LPPSVDLQALSNKMREVGEVKFVDVLGM--GRAIVSFFNVRDAERCVKFFDGSKVDGQTI 159
LP Q L G ++ V V G A V + +VRDAE V+ DGS++ G
Sbjct: 10 LPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRA 69
Query: 158 EVK 150
V+
Sbjct: 70 RVE 72
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -3
Query: 332 LPPSVDLQALSNKMREVGEVKFVDVLGM--GRAIVSFFNVRDAERCVKFFDGSKVDGQTI 159
LP Q L G ++ V V G A V + +VRDAE V+ DGS++ G
Sbjct: 10 LPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRA 69
Query: 158 EVK 150
V+
Sbjct: 70 RVE 72
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -3
Query: 332 LPPSVDLQALSNKMREVGEVKFVDVLGM--GRAIVSFFNVRDAERCVKFFDGSKVDGQTI 159
LP Q L G ++ V V G A V + +VRDAE V+ DGS++ G
Sbjct: 10 LPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRA 69
Query: 158 EVK 150
V+
Sbjct: 70 RVE 72
>U00043-5|AAN65292.1| 505|Caenorhabditis elegans Hypothetical
protein T26A5.5b protein.
Length = 505
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 527 SATLAGRSSWPGRIQWPPASERRWSSFGARQRR 625
S L + W G QWP A +RW SF R ++
Sbjct: 104 SPELVRQIDWVGN-QWPDALRQRWISFNGRDKK 135
>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
protein T26A5.5a protein.
Length = 1076
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 527 SATLAGRSSWPGRIQWPPASERRWSSFGARQRR 625
S L + W G QWP A +RW SF R ++
Sbjct: 104 SPELVRQIDWVGN-QWPDALRQRWISFNGRDKK 135
>AC006603-3|AAF39750.1| 204|Caenorhabditis elegans Hypothetical
protein B0524.5 protein.
Length = 204
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 416 RAAPSAQSVHAFESDNTKQSTSMVVFSYLPPSVDLQALSNKMREVG 279
RAAP + F ++T ST S +PP+ ++ + N R +G
Sbjct: 48 RAAPPRKKKEIFLEEHTPPSTDTDEVSTIPPAEQIRIVENHRRRIG 93
>AF077545-1|AAC26306.2| 506|Caenorhabditis elegans Hypothetical
protein H41C03.3 protein.
Length = 506
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -3
Query: 455 NCSRQAVDDKRDSRAAPSAQSVHAFESDNTKQSTSMVVFSYLPPSVDLQALSN 297
+C R DDK + V E+ N S S ++ LP DL+ L N
Sbjct: 108 DCGRILADDKVYLQTVSGKDRVKIVENKNLNMSCSAIMNRILPSGNDLKPLKN 160
>Z81457-3|CAB03815.1| 279|Caenorhabditis elegans Hypothetical
protein C01G12.5 protein.
Length = 279
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +3
Query: 387 VYGLRGGGGPAVSLIVDRLPAAVTIECRGVFELLSLDDVPLRAGLVPARHLLGVHHGQAV 566
V G G G A ++++ R A VTI R L LR+G VP H+L + A
Sbjct: 11 VTGSSNGIGRATAILLAREGAKVTITGRNAQRLEETKQEILRSG-VPEDHVLSIIADLAT 69
Query: 567 FSGR 578
SG+
Sbjct: 70 ESGQ 73
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 353 SMVVFSYLPPSVDLQALSNKMREVGEVKFV--DVLGMGRAIVSFFNVRDAERCVKFFDGS 180
S + F + P DL+ + K V +V+ + + G V+ +DAER + GS
Sbjct: 158 SNIPFRFRDP--DLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGS 215
Query: 179 KVDGQTIEV 153
++G+ IEV
Sbjct: 216 MIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 353 SMVVFSYLPPSVDLQALSNKMREVGEVKFV--DVLGMGRAIVSFFNVRDAERCVKFFDGS 180
S + F + P DL+ + K V +V+ + + G V+ +DAER + GS
Sbjct: 158 SNIPFRFRDP--DLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGS 215
Query: 179 KVDGQTIEV 153
++G+ IEV
Sbjct: 216 MIEGRKIEV 224
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -1
Query: 457 VTAAGRRSTISETAGPPPPRSPYTHLNLTT-PSNRPAW 347
+ A +TI PP P P T L LT+ PS P W
Sbjct: 1385 IDAETNSATIPTIGTPPSPLKPKTKLGLTSHPSAIPPW 1422
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,312,193
Number of Sequences: 27780
Number of extensions: 301751
Number of successful extensions: 1260
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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