Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_J18
(861 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 94 3e-20
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 69 9e-13
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 61 2e-10
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 49 7e-07
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 48 2e-06
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 44 2e-05
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 43 6e-05
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 40 3e-04
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 35 0.017
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 31 0.16
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 27 3.4
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac... 27 4.5
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 6.0
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 26 6.0
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 26 6.0
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 26 7.9
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 7.9
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.9
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 93.9 bits (223), Expect = 3e-20
Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 9/138 (6%)
Frame = -1
Query: 627 LEVRSLAHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTI---LYDDYE--Q 463
LE++++ +GL+G PNAGKST+L ++ ++ V Y FTT+ P IGTI + DD+ Q
Sbjct: 231 LELKTICEIGLVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSFQ 290
Query: 462 VAVADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLLD---GSSSPGDQ-LRVLRRELRG 295
+AD+PG+I G+ GLG FL+HVER + L ++D + P DQ ++L EL
Sbjct: 291 YRLADIPGIIKGASDGKGLGYDFLRHVERAKMLCLVIDINPKAKIPADQAFQLLWDELNK 350
Query: 294 YSXXXXXXXXXLVVNKID 241
Y ++ NK D
Sbjct: 351 YEKNLINKVALVIANKAD 368
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 68.9 bits (161), Expect = 9e-13
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Frame = -1
Query: 603 VGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIPGS 424
VG +GFP+ GKST++ ++ R A Y FTTL G + Y+ ++ + DLPG+I G+
Sbjct: 66 VGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNG-AKIQILDLPGIIEGA 124
Query: 423 HMNYGLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRRELRGYSXXXXXXXXXLVVNKI 244
G G Q + C L+F++ P R++ EL G+ +V K
Sbjct: 125 KDGRGRGKQVITVARTC-NLIFIVLDVLKPMSHKRIIEEELEGFGIRLNKEPPNIVFKKK 183
Query: 243 DLP--EAKRNYELMRNDYDNVIGVSAKXRGQSAATAGR 136
+ L D D + V ++ R SA A R
Sbjct: 184 ERGGINITNTVPLTHIDLDEIRAVCSEYRVNSADIAFR 221
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 61.3 bits (142), Expect = 2e-10
Identities = 37/103 (35%), Positives = 55/103 (53%)
Frame = -1
Query: 609 AHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLIP 430
A V +GFP+ GKST+L AI++ + A Y FTTL G + YD E + + DLPG+I
Sbjct: 63 ARVAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAE-IQMLDLPGIIE 121
Query: 429 GSHMNYGLGIQFLQHVERCRGLVFLLDGSSSPGDQLRVLRREL 301
G+ G G Q + R L+ ++ ++ DQ + EL
Sbjct: 122 GASQGRG-GRQAVS-AARTADLILMVLDATKAADQREKIEYEL 162
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 49.2 bits (112), Expect = 7e-07
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Frame = -1
Query: 591 GFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLI--PGSHM 418
G+PN GKS+ + ++RA+ +V PY FTT +G Y Y + V D PG++ P M
Sbjct: 175 GYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDY-KYLRWQVIDTPGILDHPLEQM 233
Query: 417 NYGLGIQFLQHVERCRGLV-FLLDGSSSPGDQLRVLRRELRGYSXXXXXXXXXLVVNKID 241
N + +Q + + R V + +D S G + + LV+NKID
Sbjct: 234 N-TIEMQSITAMAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKID 292
Query: 240 L--PE--AKRNYELMRNDYDN 190
PE ++N EL++ D+
Sbjct: 293 AMRPEDLDQKNQELLQTIIDD 313
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 48.0 bits (109), Expect = 2e-06
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 25/123 (20%)
Frame = -1
Query: 603 VGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPH--IGTI----------LYDDYEQV 460
+G +G P++GKST+L A++ A +PFTT++P+ IG L D + +
Sbjct: 7 IGFVGKPSSGKSTMLNALTDATAKTGNFPFTTIEPNRAIGYAQIECACSRFGLQDKCKPI 66
Query: 459 -------------AVADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLLDGSSSPGDQLR 319
+ D+ GLIPG+H GLG +FL + LV ++D S + + +
Sbjct: 67 YGGCKNGVRSIPIQLLDVAGLIPGAHAGKGLGNKFLDDLRHADALVHVVDVSGTTDAEGK 126
Query: 318 VLR 310
V R
Sbjct: 127 VCR 129
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 44.4 bits (100), Expect = 2e-05
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Frame = -1
Query: 600 GLLGFPNAGKSTVLRAISRA-RPNVAPYPFTTLKPHIGTILYDD---------YEQ---- 463
G++G PN GKST RAI+++ N A YP+ T+ P + D Y+
Sbjct: 24 GIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRV 83
Query: 462 ---VAVADLPGLIPGSHMNYGLGIQFLQHV 382
+ V D+ GL G+ GLG FL HV
Sbjct: 84 PAFLTVFDIAGLTKGASTGVGLGNAFLSHV 113
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 42.7 bits (96), Expect = 6e-05
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = -1
Query: 666 SRVRGCRRNXHYHLEVRSLAHVGLLGFPNAGKSTVLRAISRARP-NVAPYPFTTLKPHIG 490
S ++ R+ H + + ++ VGL+GFPNAGKS+++ + + + NVAP P T
Sbjct: 293 SLIQILRQFASLHSDKKQIS-VGLIGFPNAGKSSIINTLRKKKVCNVAPIPGETKVWQYV 351
Query: 489 TILYDDYEQVAVADLPGLIPGS 424
++ +++ + D PG++P S
Sbjct: 352 ALM----KRIFLIDCPGIVPPS 369
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 40.3 bits (90), Expect = 3e-04
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 17/101 (16%)
Frame = -1
Query: 603 VGLLGFPNAGKSTVLRAISRAR-PNVAPYPFTTLKP-HI-GTILYDDYE----------- 466
+G++G PN GKST+ + +++ N A YPF T+ P H +L YE
Sbjct: 48 IGIVGMPNIGKSTLFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELLCEIYQPKTR 107
Query: 465 ---QVAVADLPGLIPGSHMNYGLGIQFLQHVERCRGLVFLL 352
Q+ + D GL S GLG FL ++ L L+
Sbjct: 108 IPAQLTIYDTAGLTRNSSKGEGLGNAFLSNIRSVDALFQLV 148
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 34.7 bits (76), Expect = 0.017
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -1
Query: 600 GLLGFPNAGKSTVLRA-ISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLPGLI 433
GL+G+PN GKS+ + A + + +V+ P T H TI E+V++ D PGL+
Sbjct: 305 GLVGYPNVGKSSTINALVGSKKVSVSSTPGKT--KHFQTINLS--EKVSLLDCPGLV 357
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 31.5 bits (68), Expect = 0.16
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -1
Query: 624 EVRSLAHVGLLGFPNAGKSTVLRAISRARPN--VAPYP 517
+++S VG++G+PN GKS+V+ A+ N AP P
Sbjct: 265 KLKSSLTVGVIGYPNVGKSSVINALVNRSANGRSAPCP 302
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = -1
Query: 621 VRSLAHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVAVADLP 442
+R +V +LG NAGKS+++ ++ R ++ T + I ++ + V ++D
Sbjct: 236 LRKGINVAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIEVLVDINGFPVLLSDTA 295
Query: 441 GLIPG 427
GL G
Sbjct: 296 GLRKG 300
>SPAC11D3.03c |||meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 525 PYPFTTLKPHIGTILYDDYEQVA-VADLPGLIPGSHM 418
P P PH G+ LY D E A +A+ P + G H+
Sbjct: 22 PKPLPAYYPHPGSPLYADKELYARIANAPKKLVGRHV 58
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 219 YELMRNDYDNVIGVSAKXRGQSAATAG 139
Y L+ DYD VIGV+ K QS + G
Sbjct: 715 YHLL-GDYDTVIGVAIKNLSQSIVSRG 740
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = -1
Query: 606 HVGLLGFPNAGKSTVLRAISRARPN------VAPYPFTTLKPHIGTILYDDYEQVAVADL 445
+V +G PN GKS++L ++ V YP T + L++D + V + D
Sbjct: 147 YVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYPGVTKRISEIVRLFNDMD-VYMLDT 205
Query: 444 PGLIPGS 424
PG++ S
Sbjct: 206 PGIMTPS 212
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -1
Query: 636 HYHLEVRSLAHVGLLGFPNAGKSTVLRAISRARPNVAPYPFTTLKPHIGTILYDDYEQVA 457
H +L + G++G GKST+LRAI + P P + L + +A
Sbjct: 462 HTNLHLYRGHRYGVVGHNGCGKSTLLRAIGDYKVENFPSPDEVKTCFVAHSLQGEDTSMA 521
Query: 456 VAD 448
+ D
Sbjct: 522 ILD 524
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 555 LSARCSSRHSGTPATRRGPVSVPP 626
L R S SG PA PV+VPP
Sbjct: 1021 LPPRSGSSSSGVPAPNLTPVNVPP 1044
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 600 GLLGFPNAGKSTVLRAISR 544
GL G GKST+LRA+SR
Sbjct: 212 GLTGRNGIGKSTLLRALSR 230
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -1
Query: 615 SLAHVGLLGFPNAGKSTVLRAISR 544
S HV ++G N+GKST+L+ +++
Sbjct: 208 SRGHVYVVGEANSGKSTLLKTLAK 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,702
Number of Sequences: 5004
Number of extensions: 53236
Number of successful extensions: 169
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -