Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_J18
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    30   0.024
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   8.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 30.3 bits (65), Expect = 0.024
 Identities = 22/75 (29%), Positives = 27/75 (36%)
 Frame = -1

Query: 705 TXFPHGHXTGXGHSRVRGCRRNXHYHLEVRSLAHVGLLGFPNAGKSTVLRAISRARPNVA 526
           T  PH H  G GHS +     + H H       H      P A  S          P+  
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH----STPLAHSSYPAAIQIGHTPHHH 466

Query: 525 PYPFTTLKPHIGTIL 481
           P+P  T  P + TIL
Sbjct: 467 PHPPETPGPQVETIL 481


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 606 HVGLLGFPNAGKSTVLRAIS 547
           ++G +G    GKST+++AIS
Sbjct: 44  NIGTIGHVAHGKSTIVKAIS 63


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 355 QENQPSAPLHVLQELYTQ--AVVHV 423
           QEN P   L  LQEL+ Q  A+V +
Sbjct: 228 QENSPLLDLRQLQELHLQRNAIVEI 252


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 309 RELRGYSXXXXXXXXXLVVNKIDLPEAKRNYELMRNDYDNVIGV 178
           +ELR  +         L+++K      +  YE++R+ YDN I V
Sbjct: 15  KELRNLAQQAFAHSNQLIIDKSLKGWKEVEYEVVRDAYDNCITV 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,044
Number of Sequences: 438
Number of extensions: 3945
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)