Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_J16
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    63   4e-11
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    33   0.035
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    32   0.081
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    32   0.11 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    30   0.43 
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       29   1.00 
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    28   1.3  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   2.0  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   2.3  
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    26   5.3  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    25   9.3  

>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 760

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
 Frame = -1

Query: 581  PAVPRALAXYIVSSYVELR----REARNARDVTFTSARNXXXXXXXXXXXXXXXLSDVVE 414
            P VP+ +  Y+  +YV+LR    R+  N R    T+ R                 S+ VE
Sbjct: 593  PVVPKDVCDYVTGAYVQLRQNQKRDEANERQFAHTTPRTLLAILRMGQALARLRFSNRVE 652

Query: 413  KEDVSEAIRHVEMSKQSLQHVEENVQRGITSTDRIFAIVRDLA-------GSNKTVKVAD 255
              DV EA+R + +SK SL    +      T T +I+ I+RD+        G+ +++ +  
Sbjct: 653  IGDVDEALRLMSVSKSSLYDDLDPSSHDTTITSKIYKIIRDMLNSIPDVEGNERSLTLRA 712

Query: 254  VIERCVDKGFKPDQVDACIEEYENLNV 174
            + ER + KGF  D +   I+EY +L V
Sbjct: 713  IRERVLAKGFTEDHLINTIQEYTDLGV 739



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = -2

Query: 748 DLLWLIQDKPNREKDLELAKHIAYVH 671
           D+L+LI D P+RE D  LA+H+ YVH
Sbjct: 538 DILFLILDTPSRETDEHLAQHVTYVH 563


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 33.5 bits (73), Expect = 0.035
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
 Frame = -3

Query: 390 SSRGDVKAIPTTRGRKRSEGYNVNGPYIRDSARPGRLQQDRQSR--RCH-REVRRQRIQT 220
           SSR      P++R R R + Y+ + PY    +R  R  ++R SR  R H  +    R   
Sbjct: 154 SSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYEERSSRSSRAHDYDYEDLRDDD 213

Query: 219 RSGGRLHRRIRELERVA--SEPGADQDNVHV 133
           RS  R   R R  ER +  SE   D+  V V
Sbjct: 214 RSHERKRSRSRPRERSSKLSEEERDRRTVFV 244


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 32.3 bits (70), Expect = 0.081
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = -3

Query: 363 PTTRGRKRSEGYNVNGPYIRDSARPGRLQQDRQSRRCHREVRRQRIQTRSGGR 205
           P  R R R + Y   G Y RD+ RPGR  + R + R     R  R + R GGR
Sbjct: 189 PPARRRYRDD-YRRGGDYRRDAYRPGRDDERRYAPRGEYR-RNNRDEYRRGGR 239


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 778 NSAXRXVXALDLLWLIQDKPNREKDLELAKHIAYVHQQLDPAAQ 647
           N +   +   DL +++ D+ N   D  LAKHI  +H+  D A Q
Sbjct: 601 NMSAPIMSRFDLFFVVLDECNESVDRHLAKHIVDIHRLRDDAMQ 644


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -2

Query: 748 DLLWLIQDKPNREKDLELAKHIAYVHQQLDPAAQ 647
           DLL+++ D  + +KD  L++H+  +H+ L P  +
Sbjct: 491 DLLFIVTDDIDDKKDRALSEHVLRMHRYLPPGVE 524


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
 Frame = -3

Query: 387 SRGDVKAIPTTRGRKRSEGYNVN----GPY--IRDSARPGRLQQDRQSRRCHREVRRQRI 226
           +RGD +     R R RS  ++ +     PY   R S  P R  +     R HR  RR R 
Sbjct: 145 ARGDSRERDRDRDRTRSSRFDDDDDDRAPYEESRLSRAPSRASRYDDDDRDHRSRRRSRS 204

Query: 225 QTRSGGRLHRRIRELERVASEPGADQDNVHVMPV 124
           +     R  RR R     A    A++++  +  V
Sbjct: 205 RRPGRSRSRRRSRRPSPSAEHNSAEENDPELQRV 238


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 290 LAGSNKTVKVADVIERCVDKGFKPDQVDACIEEYENLNV 174
           LA    T KV DV+E   D   + +++DA I+ Y   N+
Sbjct: 347 LAQMGGTEKVEDVLENVNDTLARSEEIDATIQTYNPQNI 385


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 24.6 bits (51), Expect(2) = 2.0
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 205 AST*SGLNPLSTHLSMTSATLTVLLEPARSRTIANIRSVDVIPL*TFSST 354
           +S+ S   P+STH S  + T +  L  + S + ++  S   IP+ T SS+
Sbjct: 54  SSSSSTFVPISTHTSSATNTTSGQLSISSSSSTSSEYSSSSIPITTVSSS 103



 Score = 21.4 bits (43), Expect(2) = 2.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 463 SMASKFLADVNVTSRAFLASRRSSTYEETMXSASARGTAGS 585
           S +    A  + T    ++S  SST   T  S    GT+G+
Sbjct: 109 SSSQTISASSSTTDNVIVSSSISSTVSSTPVSTIYSGTSGT 149


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 463  CASRPHSQGSDYQTSLKRRTYLRQFVT 383
            C      + SDYQ+ L++RT L++ VT
Sbjct: 1138 CNKEAEKRDSDYQSELQKRTDLKKVVT 1164


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 386 HVEMSKQSLQHVEENVQRGITSTDRIFAI 300
           H+E  K+   ++E+  Q+GIT   R+ +I
Sbjct: 306 HIETLKELEDYIEDAKQKGITGVKRVSSI 334


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 209 DACIEEYENLNVWQ 168
           D C+ +Y N NVWQ
Sbjct: 131 DECLRKYGNANVWQ 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,698
Number of Sequences: 5004
Number of extensions: 52032
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)