Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_J15
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    66   4e-12
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.4  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   2.4  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   2.4  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.1  
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    26   5.5  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    26   7.2  
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz...    26   7.2  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
 Frame = -2

Query: 636 VFMSCNLITGMFQRFDKMRKQAFASVCLFGEDINSTISGVWVWRGKELV--FPLSSDWQV 463
           VFM+ NLI G FQR +  RK  F    + GE+ ++TI+G +V +G + V  F ++ DW  
Sbjct: 311 VFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAFDVAPDW-- 368

Query: 462 DYESYDWKKLDPSSEETKKLVQDYFSWNGTDKDGRKFNQGKIFK 331
              SY + KLD +  E K  ++D ++W+    +GR+   GK+ K
Sbjct: 369 --GSYTFTKLDINKPEDKAFIEDAWAWD-KPIEGREVADGKVCK 409



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -3

Query: 734 TRRANXFXLLEKFDPENYSIWYAEYXYPE 648
           TR        E FDPENYS+W  +Y YPE
Sbjct: 277 TRSGALPWFFEHFDPENYSVWKVDYSYPE 305


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 401  SRTTSHGTEPTKTVESSTRARYSSECRPTSS 309
            S TTS  T  + T+ SSTR+  +SE   TSS
Sbjct: 987  SSTTSGLTSSSSTIPSSTRSESNSESASTSS 1017


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 468 QVDYESYDWKKLD 430
           QVDY SYDWK+ D
Sbjct: 298 QVDYLSYDWKETD 310


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 500 RSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSHGTEPTKTVESSTR 345
           R S S  R+I    T P   R++    ++ +N   T     EP +TVE  TR
Sbjct: 531 RKSSSILRMISHSNTDPVELRSYNQSLQQNKNNEPTAVVPLEPEQTVELETR 582


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 242 IYI*MFLFCKVFYSYCMKCVYIGWTLVGIHLNILPWLNFLPSLSVPFHEK 391
           +YI M  +  +FY Y      +G  ++GI + IL  L   P + V +  +
Sbjct: 355 LYICMVGYPLIFYQYGFNAGEVGLAILGILVGILLGLALTPIIYVHYRRR 404


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 509 HTHTPEMVELMSS---PNRQTDAKACLRILSNLWNIPVIRL 622
           + H P  V+ ++    PN   +   CL IL   WN PV+ L
Sbjct: 80  YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 799 LRVQTXXFMLKSFNMXFSVLLQRDELXYSYFWRSLTP 689
           L V+    +L   N  FSV+L+  +  +  FW  L P
Sbjct: 835 LAVENDQNLLNEINKTFSVVLKIHKTAFCPFWERLLP 871


>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
           E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 500 FPRHTHTPEMVELMSSPNRQTDAKACLRILSNLWN 604
           +P      + V  M  PN   + + CL IL N W+
Sbjct: 63  YPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWS 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,339,461
Number of Sequences: 5004
Number of extensions: 72356
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)