Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_T7_J15
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 54 1e-07
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 45 6e-05
08_02_0742 - 20630313-20630798 37 0.016
05_04_0146 + 18393447-18394043 31 0.81
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 31 1.1
05_04_0154 - 18549806-18550161,18550271-18550907 31 1.4
03_06_0260 - 32717142-32717270,32717743-32717831,32717950-327180... 29 4.3
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 29 5.7
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 28 7.6
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 28 7.6
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 10.0
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 54.4 bits (125), Expect = 1e-07
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = -2
Query: 633 FMSCNLITGMFQRFDKMRKQAFASVCLFGEDINSTISGVWVWRGKELVFPLSSDWQVDYE 454
F++ N + G QR D RK AF + + G + + G+W++RG E+ D D E
Sbjct: 325 FVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDME 383
Query: 453 SYDWKKLDPSSEETKKLV 400
Y+W K+D S E K+ V
Sbjct: 384 LYEWTKVDISDEAQKERV 401
Score = 54.4 bits (125), Expect = 1e-07
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = -2
Query: 633 FMSCNLITGMFQRFDKMRKQAFASVCLFGEDINSTISGVWVWRGKELVFPLSSDWQVDYE 454
F++ N + G QR D RK AF + + G + + G+W++RG E+ D D E
Sbjct: 890 FVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDME 948
Query: 453 SYDWKKLDPSSEETKKLV 400
Y+W K+D S E K+ V
Sbjct: 949 LYEWTKVDISDEAQKERV 966
Score = 29.9 bits (64), Expect = 2.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 704 EKFDPENYSIWYAEYXY 654
+ +DPE YS+W+ +Y Y
Sbjct: 301 DMYDPEGYSLWFCDYKY 317
Score = 29.9 bits (64), Expect = 2.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 704 EKFDPENYSIWYAEYXY 654
+ +DPE YS+W+ +Y Y
Sbjct: 866 DMYDPEGYSLWFCDYKY 882
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 45.2 bits (102), Expect = 6e-05
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = -2
Query: 606 MFQRFDKMRKQAFASVCLFGEDINSTISGVWVWRGKELVFPLSSDWQVDYESYDWKKLDP 427
M +R D RK AF + + G + G+W++RG+++ D D E Y+W K+D
Sbjct: 345 MNKRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIP-KFVMDEVYDMELYEWTKVDL 403
Query: 426 SSEETKK----LVQDYFSWNGTD 370
S E K+ +++D + G D
Sbjct: 404 SDEAQKERVNAMIEDQEPFEGED 426
Score = 29.9 bits (64), Expect = 2.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 704 EKFDPENYSIWYAEYXY 654
+ +DPE YS+W+ +Y Y
Sbjct: 318 DMYDPEGYSLWFCDYKY 334
>08_02_0742 - 20630313-20630798
Length = 161
Score = 37.1 bits (82), Expect = 0.016
Identities = 21/82 (25%), Positives = 33/82 (40%)
Frame = -3
Query: 563 PSACLVKTSIPPSLECGCGAERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSH 384
P +++S PP C CG S + + T P++ ARR R +
Sbjct: 25 PDPPSLRSSTPPDPSCHCGPSAGSTAAEVPHAGYATPPSSSHGEEEAARRRRRGRGEEAD 84
Query: 383 GTEPTKTVESSTRARYSSECRP 318
G +P + V + + R CRP
Sbjct: 85 GVDPVRAVTTKRQRRGGRRCRP 106
>05_04_0146 + 18393447-18394043
Length = 198
Score = 31.5 bits (68), Expect = 0.81
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -3
Query: 602 SRGLTKCANRLSHPSACLVKTSIPPSLECGCGAERSSCSRCRLIGRWTTSP---TTGRNW 432
+RG TK A + +A + S E GC A RS+CS L G TT+P TG W
Sbjct: 113 ARGRTKAAVAPAAAAAVVAAASAGGGREMGCRAGRSTCS---LHGTTTTTPRWRQTGGPW 169
Query: 431 ILRARR 414
R +
Sbjct: 170 RRRQNK 175
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +2
Query: 491 TSSFPRHTHTPEMVELMSSPNRQTDAKACLRILSNLWN 604
T +P T V M PN D CL IL N W+
Sbjct: 84 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 121
>05_04_0154 - 18549806-18550161,18550271-18550907
Length = 330
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -3
Query: 539 SIPPSLECGCGAERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSH 384
S PP+ A +S + RL+G TT+ TT R A PR+ ++SH
Sbjct: 161 SSPPTSSAFPAATTASAKKPRLLGSQTTT-TTSRTSTSNATTPRSFDTSSSH 211
>03_06_0260 -
32717142-32717270,32717743-32717831,32717950-32718039,
32721571-32721596,32721772-32721896
Length = 152
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +2
Query: 491 TSSFPRHTHTPEMVELMSSPNRQTDAKACLRILSNLWN 604
T +P V M PN D CL IL N W+
Sbjct: 60 TEDYPNKPPVVRFVSRMFHPNIYADGSICLDILQNQWS 97
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 569 SHPSACLVKTSIPPSLECGCGAERSSC 489
SH C+ K + PP CGC +C
Sbjct: 206 SHAFVCVCKPAPPPPPPCGCSGGHGNC 232
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -3
Query: 674 WYAEYXYPEXSLKCS*AVTLLRVCSRGLTKCANRLSHPSACLVKTSIPPSLEC 516
W + + + + S LL V R L+K N + AC+V +PPS C
Sbjct: 583 WSSPFVKSQEEARTSLFALLLHVAIRLLSK--NDATFRKACMVAAKLPPSSSC 633
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = -3
Query: 503 ERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSHGTEPTKTVESSTRARYSSE 327
ER +C + WT S W+L+ R P LS S ++ ++ + S+E
Sbjct: 137 ERGERGKCSMWTLWTHSQLVVVGWLLKRRPPTKLSELESQLSQLQDELKKAKEQLLSTE 195
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 418 LARRIQFLPVVGLVVHLPIRRQREHELLSAPHPHSRD 528
+A + F+ ++G+ + L +RR+R+H L H D
Sbjct: 270 VAGAVSFMVILGVSIWLLLRRRRKHARLMREHQEMED 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,913,710
Number of Sequences: 37544
Number of extensions: 445838
Number of successful extensions: 1150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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