Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_J14
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    27   3.3  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   4.4  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   5.8  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   7.7  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    26   7.7  

>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 478 DYTVNPPSKFALTVAGWGRYLQFDNGTVRSSKIKL 374
           +Y   PP +FAL  +G+ R L  D G V ++K+ L
Sbjct: 136 EYFSQPPFRFALFFSGYFRPLLMD-GAVHATKLDL 169


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 153 WPHFSGPKLTIPTASYFLECSYIRGPPESPLQESLPASPPAHICPFHNVILWP 311
           W H S  KL I  +  + + S+++GP E   QE   +     +  F N  + P
Sbjct: 545 WAHSSKTKLNISYSVEWSKSSWLKGPIEKGAQEGQASYVKDLLTAFENYKVSP 597


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 453 LLGGFTV*SVLGK-HIGLMKSVKGAMLCSLINPMSC 557
           LLGGF    ++G    GL   V   ++CS+I+  SC
Sbjct: 518 LLGGFLAWLIIGAIEGGLSMIVDALLICSIIDISSC 553


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +3

Query: 153 WPHFSG--P-KLTIPTASYFLECSYIRGPPESPLQESLPASPP 272
           +P FSG  P  +  PTAS    C  I G P SP   +  A  P
Sbjct: 203 YPGFSGLTPFSIHSPTASSVRSCQSIYGSPLSPPNSAFQAEMP 245


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = -1

Query: 553 DIGLIRLQSIAPFTDFIRPICLPSTDYTVNPPSKFALTVAGWGRYLQFDN 404
           D   + +  +    +F+ P CL    +T      F L VA W  +   D+
Sbjct: 43  DCVFLEISELREIIEFVGPDCLRGIYFTEPISQCFVLHVANWEEWSSIDS 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,618,261
Number of Sequences: 5004
Number of extensions: 80445
Number of successful extensions: 235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)