Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_J13
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    28   1.4  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    28   1.8  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    27   3.2  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   5.6  
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom...    25   9.8  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   9.8  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    25   9.8  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    25   9.8  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   9.8  

>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 473 EDCPAVPSLLGLNFHGDDIFFRILLRFPE 559
           ++CP +P L      GD+ F  + L+ PE
Sbjct: 142 DECPNIPELEAAKIEGDEEFLNMSLKAPE 170


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 574 GGYNVFGKSKKNSEEDVVTVEVEPKERW 491
           GGY  +   + +S  D V V+VEP E W
Sbjct: 165 GGYVAWEMGELHSGADSVAVQVEPVENW 192


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -3

Query: 517 VEVEPKERWDCGTILSTYSNLYNHPKLIEEPKKPKRIVIDPKTGIPKDVLGTD 359
           VE++ KE W    + S+++++     +   P K  ++ I  K+G+PK ++ +D
Sbjct: 427 VEIDLKEHWK--EVPSSFTDILTQKTI---PCKDHKLKIKSKSGLPKILISSD 474


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 565 NVFGKSKKNSEEDVVTVEVEPKERWDCGTILS 470
           ++FGK  K   E ++  E + KER D   ++S
Sbjct: 715 DIFGKPTKKFHEQLLEFETDEKERADLQILIS 746


>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 439 LIEEPKKPKRIVIDPKTGIPKDVLGTDGGRLTV 341
           L E  KKPK     PK  +  D++G   GR+ V
Sbjct: 242 LEEALKKPKTQEPKPKKNVDVDIIGNKVGRIHV 274


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = -3

Query: 514 EVEPKERWDCGTILSTYSNLYNHPKLIEEPKKPKRIVIDPKTGIPK 377
           +++P +R+D   +L    N  N P +  E   P+   ++ +T + +
Sbjct: 22  QLDPVQRFDTHFMLPQEENFLNRPSITSESAHPRGSDLEQETELKR 67


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 594 RQGNRNEEVTTSSGNRRR--ILKKMSSPWKLSPRRDGTAGQSSAPT 463
           R  NR+  V++SSG+R R  +  + SSP      R      SS+P+
Sbjct: 89  RWANRHSNVSSSSGSRGRSSVSSRDSSPSYSGALRSAERSISSSPS 134


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 556 GKSKKNSEEDVVTVEVEPKERWD 488
           GK KK  E+D V ++ E    WD
Sbjct: 22  GKKKKKKEKDFVEIQDEDVAGWD 44


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 481 TILSTYSNLYNHPKLIEEPKKPKRIVIDPKTGIPKDVLGTDG-GRLTVK 338
           T + TYS     PKL++    P    I   T +PKD  G    GRL V+
Sbjct: 99  TPMGTYSE---KPKLLQSRTPPSSCYIRHDTVVPKDKNGQHAFGRLYVR 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,260
Number of Sequences: 5004
Number of extensions: 33761
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)