Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_J13
         (819 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-3|CAB03401.1|  410|Caenorhabditis elegans Hypothetical pr...    46   3e-05
AL132948-34|CAD31836.1|  248|Caenorhabditis elegans Hypothetical...    30   2.3  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical pr...    28   9.2  
U80839-12|AAB37918.1|  252|Caenorhabditis elegans Hypothetical p...    28   9.2  

>Z81128-3|CAB03401.1|  410|Caenorhabditis elegans Hypothetical
           protein T23D8.3 protein.
          Length = 410

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = -3

Query: 556 GKSKKNSEEDVVTVE--VEPKERWDCGTILSTYSNLYNHPKLIEEPK 422
           G  K   E ++V V+     K +WDC +  + Y+N+YNHP LI+EP+
Sbjct: 263 GVIKDKEEYEIVEVDEGTNKKMKWDCESFATQYTNIYNHPTLIKEPR 309


>AL132948-34|CAD31836.1|  248|Caenorhabditis elegans Hypothetical
           protein Y39B6A.46 protein.
          Length = 248

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 517 VEVEPKERW--DCGTILSTYSNLYNHPKLIEEPKKPKRIVIDPKTGIPKD 374
           V  +P+E +   CG   +    LY H K  E   +P R  I+ K  IP +
Sbjct: 105 VTSQPRELYCFTCGDAFNNRKGLYRHGKTAEHATRPPRRKIERKIQIPAE 154


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 561 SSGNRRRILKKMSSPWKLSPRRD 493
           S+GNRRR   +  SP + SPRRD
Sbjct: 208 SAGNRRRSPPRRGSPRRGSPRRD 230


>Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical
           protein T24D1.2 protein.
          Length = 464

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -1

Query: 621 RGLAEEVQARQGNRNEEVTTSSGNRRRILKKMSSPWKLSPRRDGTAGQSSAPTPTCTTI 445
           R LAE +Q  Q +         G  R   ++ +SP+  S R   TAG S A   + +++
Sbjct: 27  RELAERLQREQSDDTPPAVARRGRNRAAARERASPYSRS-RIRSTAGTSDAGPSSSSSV 84


>U80839-12|AAB37918.1|  252|Caenorhabditis elegans Hypothetical
           protein ZC204.12 protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 442 KLIEEPKKPKRIVIDPKTGIPKDVLGTDGGRLTVK 338
           KL    K   ++ ID K+GIP+ V GT   RL +K
Sbjct: 11  KLAASFKDASKLGIDQKSGIPRKVKGTLTWRLELK 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,050,491
Number of Sequences: 27780
Number of extensions: 197840
Number of successful extensions: 664
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)