Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_T7_J11
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   2.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   3.2  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   4.2  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  

>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 265 FYFAISTXIRKTEASRLTRVASIFNCITNIAPYNLRN 375
           + F+ ST +RK EA     + ++FN I+    Y+L N
Sbjct: 299 YNFSTSTSLRKREALDGEDIGNVFNSISGCDLYSLSN 335


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 217 IVDQSVT*TNLNFNETFYFAISTXIRKTEAS--RLTRVASIFNCITNIAPYNLRN 375
           IVD  +T  N+N +   +F+    ++  E +   LTR  +    +TN +P +L N
Sbjct: 360 IVDMDITSNNINLSPVSHFSNGLDLQNLEEAPMNLTRPINANPHLTNHSPNDLTN 414


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 15  FAKVQTLLTSLNHYQLNS*FSTYDKLITSLL 107
           F  + +L+TS   Y+L S F+  DKL  SLL
Sbjct: 695 FIFLLSLITSQQDYELQSKFAGCDKLFLSLL 725


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 805  PPPPRSEHLXTHFNLNNLIGKLRLXPAYLT 716
            PPPPRSE + T   L   I +  L PA  T
Sbjct: 947  PPPPRSEPVSTTTKLAKRITQPSLSPARST 976


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,865
Number of Sequences: 5004
Number of extensions: 46787
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)